Variant report

Variant	rs9342830
Chromosome Location	chr6:72024809-72024810
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:72009852..72012666-chr6:72023458..72026008,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12055385	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1322759	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16881116	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2208845	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2224656	0.83[ASN][1000 genomes]
rs2273888	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58732838	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59769896	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60555932	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6908858	0.83[ASN][1000 genomes]
rs7756709	0.96[EUR][1000 genomes]
rs9294899	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9342828	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9342829	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9346455	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9346457	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9346459	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9346460	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9346462	0.81[AMR][1000 genomes]
rs9346463	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9351807	0.81[AMR][1000 genomes]
rs9354985	0.83[ASN][1000 genomes]
rs9354989	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9354993	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9354996	0.83[JPT][hapmap]
rs9360445	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9360447	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9360448	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9364148	0.83[ASN][1000 genomes]
rs9364149	1.00[CEU][hapmap];0.83[ASN][1000 genomes]
rs9364150	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9364151	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9364152	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9364153	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9364155	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9455418	0.82[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71999800-72033800	Weak transcription	Right Ventricle	heart
2	chr6:72001000-72038800	Weak transcription	Aorta	Aorta
3	chr6:72004200-72030600	Weak transcription	Lung	lung
4	chr6:72004200-72041600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:72004400-72030800	Weak transcription	Pancreas	Pancrea
6	chr6:72004400-72043000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:72009800-72025800	Weak transcription	Hela-S3	cervix
8	chr6:72010800-72038800	Weak transcription	Fetal Kidney	kidney
9	chr6:72011600-72033600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:72013200-72035800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:72018000-72037800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:72018000-72043200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:72018000-72043200	Weak transcription	HSMM	muscle
14	chr6:72018600-72030800	Weak transcription	Placenta	Placenta
15	chr6:72019200-72026400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:72020200-72043600	Weak transcription	HSMMtube	muscle
17	chr6:72022200-72031200	Weak transcription	Left Ventricle	heart
18	chr6:72023200-72031200	Weak transcription	Liver	Liver

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