Variant report

Variant	rs9354989
Chromosome Location	chr6:72022171-72022172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71997812..71999868-chr6:72020711..72023495,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119900	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12055385	0.83[AMR][1000 genomes]
rs1322759	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2208845	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2224656	0.85[ASN][1000 genomes]
rs2273888	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58732838	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59769896	0.83[AMR][1000 genomes]
rs60555932	0.82[AMR][1000 genomes]
rs7753757	0.81[ASN][1000 genomes]
rs7773440	0.91[ASN][1000 genomes]
rs9294899	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9342828	0.83[AMR][1000 genomes]
rs9342829	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9342830	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9346455	0.82[AMR][1000 genomes]
rs9346457	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9346459	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9346460	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9346462	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9354994	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9360445	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9360447	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9364150	0.83[AMR][1000 genomes]
rs9364151	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9364152	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9364153	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9364155	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71999800-72033800	Weak transcription	Right Ventricle	heart
2	chr6:72001000-72038800	Weak transcription	Aorta	Aorta
3	chr6:72004200-72030600	Weak transcription	Lung	lung
4	chr6:72004200-72041600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:72004400-72030800	Weak transcription	Pancreas	Pancrea
6	chr6:72004400-72043000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:72007000-72023000	Weak transcription	Liver	Liver
8	chr6:72009800-72025800	Weak transcription	Hela-S3	cervix
9	chr6:72010800-72022400	Weak transcription	NHEK	skin
10	chr6:72010800-72038800	Weak transcription	Fetal Kidney	kidney
11	chr6:72011600-72022600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:72011600-72033600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:72011800-72022600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:72011800-72022800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:72013200-72022400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:72013200-72035800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:72013800-72022600	Weak transcription	Adipose Nuclei	Adipose
18	chr6:72018000-72037800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:72018000-72043200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:72018000-72043200	Weak transcription	HSMM	muscle
21	chr6:72018600-72030800	Weak transcription	Placenta	Placenta
22	chr6:72019200-72026400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:72019400-72022600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:72020200-72043600	Weak transcription	HSMMtube	muscle
25	chr6:72021600-72022200	Enhancers	Left Ventricle	heart
26	chr6:72021600-72022200	Enhancers	Psoas Muscle	Psoas
27	chr6:72021600-72022200	Enhancers	Right Atrium	heart
28	chr6:72021600-72022400	Enhancers	Fetal Heart	heart
29	chr6:72021600-72022400	Enhancers	Fetal Lung	lung
30	chr6:72021600-72022800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr6:72021600-72024000	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr6:72021800-72022800	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr6:72022000-72022200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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