Variant report

Variant	rs9346455
Chromosome Location	chr6:71991816-71991817
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10945297	0.88[ASN][1000 genomes]
rs12055385	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1322759	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1322761	0.88[JPT][hapmap]
rs16881116	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2208845	0.93[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2224656	0.87[ASN][1000 genomes]
rs2273888	0.87[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs58732838	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59769896	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60555932	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6908858	0.92[ASN][1000 genomes]
rs6935796	0.87[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];0.86[MEX][hapmap];0.80[ASN][1000 genomes]
rs73749844	0.90[AFR][1000 genomes]
rs73749853	0.80[AFR][1000 genomes]
rs7753757	0.88[JPT][hapmap]
rs7756709	0.96[EUR][1000 genomes]
rs7773440	0.81[ASN][1000 genomes]
rs8180646	0.84[ASN][1000 genomes]
rs9294899	0.87[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9342827	0.87[ASN][1000 genomes]
rs9342828	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9342829	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9342830	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9346451	0.86[ASN][1000 genomes]
rs9346452	0.86[ASN][1000 genomes]
rs9346457	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9346459	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9346460	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9346463	0.89[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9354985	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap];0.92[ASN][1000 genomes]
rs9354989	0.82[AMR][1000 genomes]
rs9354993	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9354996	0.89[CEU][hapmap];0.86[CHB][hapmap]
rs9360443	0.81[ASN][1000 genomes]
rs9360444	0.88[ASN][1000 genomes]
rs9360445	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9360447	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9360448	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9364148	0.92[ASN][1000 genomes]
rs9364149	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs9364150	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9364151	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9364152	1.00[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9364153	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];0.82[JPT][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9364155	0.80[AMR][1000 genomes]
rs9455418	0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9346455	OGFRL1	cis	multi-tissue	Pritchard

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71988200-71997400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:71988200-71997400	Weak transcription	Left Ventricle	heart
3	chr6:71988400-71997800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:71991200-71992000	Enhancers	Esophagus	oesophagus
5	chr6:71991600-71997800	Weak transcription	Lung	lung
6	chr6:71991800-71997200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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