Variant report

Variant	rs9346463
Chromosome Location	chr6:72043195-72043196
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:72037856..72040073-chr6:72041777..72043546,2	K562	blood:

Variant related genes	Relation type
ENSG00000230597	Chromatin interaction
ENSG00000232295	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1022744	0.81[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs12055385	0.82[EUR][1000 genomes]
rs1322761	0.81[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16881116	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2208845	0.83[JPT][hapmap]
rs2273888	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs3756934	0.92[ASN][1000 genomes]
rs59769896	0.82[EUR][1000 genomes]
rs60555932	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6935796	0.83[JPT][hapmap]
rs7753757	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9294899	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs9342828	0.82[EUR][1000 genomes]
rs9342829	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9342830	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9342831	0.91[ASN][1000 genomes]
rs9346455	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9346459	0.82[EUR][1000 genomes]
rs9346460	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9346462	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9351807	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9354985	0.89[CEU][hapmap];0.86[CHB][hapmap]
rs9354993	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9354994	0.82[ASN][1000 genomes]
rs9354996	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes]
rs9360447	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9360448	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9364149	0.88[CHB][hapmap]
rs9364150	0.82[EUR][1000 genomes]
rs9364152	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9364153	0.89[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes]
rs9364160	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9364162	0.82[JPT][hapmap];0.87[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72018000-72043200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:72018000-72043200	Weak transcription	HSMM	muscle
3	chr6:72020200-72043600	Weak transcription	HSMMtube	muscle
4	chr6:72031600-72056600	Weak transcription	Placenta	Placenta
5	chr6:72031600-72060200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:72031600-72077400	Weak transcription	Pancreas	Pancrea
7	chr6:72033800-72046000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:72034200-72053400	Weak transcription	Psoas Muscle	Psoas
9	chr6:72034200-72058600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:72034400-72052000	Weak transcription	Adipose Nuclei	Adipose
11	chr6:72034800-72060400	Weak transcription	Left Ventricle	heart
12	chr6:72036600-72043400	Weak transcription	A549	lung
13	chr6:72036600-72055800	Weak transcription	Fetal Lung	lung
14	chr6:72036800-72043200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:72039200-72047800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:72039400-72044600	Weak transcription	Fetal Kidney	kidney
17	chr6:72039400-72060600	Weak transcription	Aorta	Aorta
18	chr6:72040600-72056600	Weak transcription	Lung	lung
19	chr6:72041000-72043400	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:72041600-72044800	Enhancers	NHLF	lung
21	chr6:72042400-72043600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:72042400-72045600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr6:72042400-72045600	Enhancers	NHDF-Ad	bronchial
24	chr6:72042600-72044800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:72042800-72043800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:72042800-72045600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:72043000-72043400	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr6:72043000-72043600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:72043000-72044200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:72043000-72044200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:72043000-72044800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:72043000-72045000	Enhancers	Osteobl	bone

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