Variant report

Variant	rs9342831
Chromosome Location	chr6:72054137-72054138
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-B3GAT2-3	chr6:72054047-72054396	ENSG00000233237
2	lnc-B3GAT2-3	chr6:72053204-72054396	XLOC_005763
3	lnc-OGFRL1-5	chr6:72054062-72054579	NONHSAT113489

rs_ID	r²[population]
rs1022744	0.83[ASN][1000 genomes]
rs10945297	1.00[AFR][1000 genomes]
rs1322761	0.85[ASN][1000 genomes]
rs16881116	0.84[ASN][1000 genomes]
rs3756934	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58416751	0.86[AFR][1000 genomes]
rs73505104	0.86[AFR][1000 genomes]
rs7753757	0.82[ASN][1000 genomes]
rs8180646	1.00[AFR][1000 genomes]
rs9346451	1.00[AFR][1000 genomes]
rs9346452	1.00[AFR][1000 genomes]
rs9346462	0.82[ASN][1000 genomes]
rs9346463	0.91[ASN][1000 genomes]
rs9351807	0.80[ASN][1000 genomes]
rs9354985	1.00[AFR][1000 genomes]
rs9354993	0.86[ASN][1000 genomes]
rs9354996	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9360444	1.00[AFR][1000 genomes]
rs9360448	0.86[ASN][1000 genomes]
rs9364148	1.00[AFR][1000 genomes]
rs9364160	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72031600-72056600	Weak transcription	Placenta	Placenta
2	chr6:72031600-72060200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:72031600-72077400	Weak transcription	Pancreas	Pancrea
4	chr6:72034200-72058600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:72034800-72060400	Weak transcription	Left Ventricle	heart
6	chr6:72036600-72055800	Weak transcription	Fetal Lung	lung
7	chr6:72039400-72060600	Weak transcription	Aorta	Aorta
8	chr6:72040600-72056600	Weak transcription	Lung	lung
9	chr6:72043400-72060200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:72044200-72059400	Weak transcription	NH-A	brain
11	chr6:72044400-72060800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:72044800-72059000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:72044800-72059200	Weak transcription	HUVEC	blood vessel
14	chr6:72044800-72060000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:72045000-72059000	Weak transcription	Osteobl	bone
16	chr6:72045800-72072200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:72048000-72057200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:72048400-72054200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:72052400-72055800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr6:72052600-72054200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr6:72052800-72055400	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr6:72052800-72059000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:72052800-72059600	Weak transcription	NHDF-Ad	bronchial
24	chr6:72052800-72059800	Weak transcription	NHLF	lung
25	chr6:72053000-72055400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:72053000-72055800	Weak transcription	Adipose Nuclei	Adipose
27	chr6:72053200-72054400	Strong transcription	HSMM	muscle
28	chr6:72053200-72059800	Weak transcription	HSMMtube	muscle
29	chr6:72053600-72054400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:72053600-72061600	Weak transcription	Fetal Kidney	kidney
31	chr6:72053800-72054600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:72053800-72055800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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