Variant report

Variant	rs7753757
Chromosome Location	chr6:72034337-72034338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1022744	0.94[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];0.88[JPT][hapmap];0.89[MEX][hapmap];0.91[ASN][1000 genomes]
rs1322761	0.94[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.96[ASN][1000 genomes]
rs16881116	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1881034	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2208845	0.83[JPT][hapmap]
rs2273888	0.88[JPT][hapmap];0.85[YRI][hapmap]
rs3756934	0.82[ASN][1000 genomes]
rs6935796	0.83[JPT][hapmap]
rs9294899	0.88[JPT][hapmap];0.85[YRI][hapmap]
rs9342829	1.00[JPT][hapmap]
rs9342831	0.82[ASN][1000 genomes]
rs9346462	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9346463	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9346464	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9354989	0.81[ASN][1000 genomes]
rs9354993	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9354994	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9354996	0.85[CHD][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs9360448	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9364152	1.00[JPT][hapmap]
rs9364153	0.87[ASW][hapmap];0.94[JPT][hapmap];0.80[LWK][hapmap];0.81[YRI][hapmap]
rs9364155	0.83[ASN][1000 genomes]
rs9364160	0.85[ASN][1000 genomes]
rs9364162	0.82[JPT][hapmap];0.90[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7753757	BAI3	cis	parietal	SCAN
rs7753757	OGFRL1	cis	cerebellum	SCAN
rs7753757	OGFRL1	cis	cerebellar cortex	BrainEAC
rs7753757	OGFRL1	cis	parietal	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72001000-72038800	Weak transcription	Aorta	Aorta
2	chr6:72004200-72041600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:72004400-72043000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:72010800-72038800	Weak transcription	Fetal Kidney	kidney
5	chr6:72013200-72035800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:72018000-72037800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:72018000-72043200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:72018000-72043200	Weak transcription	HSMM	muscle
9	chr6:72020200-72043600	Weak transcription	HSMMtube	muscle
10	chr6:72026800-72035800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:72031400-72036000	Weak transcription	Fetal Lung	lung
12	chr6:72031600-72040400	Weak transcription	Lung	lung
13	chr6:72031600-72056600	Weak transcription	Placenta	Placenta
14	chr6:72031600-72060200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr6:72031600-72077400	Weak transcription	Pancreas	Pancrea
16	chr6:72033600-72034400	Enhancers	Adipose Nuclei	Adipose
17	chr6:72033600-72034600	Enhancers	Spleen	Spleen
18	chr6:72033600-72034800	Enhancers	Left Ventricle	heart
19	chr6:72033600-72035000	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr6:72033800-72034600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:72033800-72034800	Enhancers	Fetal Muscle Leg	muscle
22	chr6:72033800-72034800	Enhancers	Right Ventricle	heart
23	chr6:72033800-72037600	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr6:72033800-72046000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr6:72034000-72034600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:72034000-72036400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr6:72034200-72034600	Active TSS	Monocytes-CD14+_RO01746	blood
28	chr6:72034200-72053400	Weak transcription	Psoas Muscle	Psoas
29	chr6:72034200-72058600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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