Variant report

Variant	rs9346462
Chromosome Location	chr6:72033574-72033575
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1022744	0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs1322761	0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs16881116	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1881034	0.82[ASN][1000 genomes]
rs2208845	0.81[YRI][hapmap]
rs2273888	0.86[JPT][hapmap]
rs3756934	0.82[ASN][1000 genomes]
rs7753757	0.81[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9294899	0.86[JPT][hapmap]
rs9342829	0.88[CEU][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes]
rs9342830	0.81[AMR][1000 genomes]
rs9342831	0.82[ASN][1000 genomes]
rs9346460	0.81[AMR][1000 genomes]
rs9346463	1.00[CEU][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9346464	0.82[ASN][1000 genomes]
rs9351807	0.86[EUR][1000 genomes]
rs9354985	0.89[CEU][hapmap]
rs9354989	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9354993	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9354994	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9354996	1.00[CEU][hapmap];0.85[ASN][1000 genomes]
rs9360447	0.83[AMR][1000 genomes]
rs9360448	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9364152	0.86[CEU][hapmap];0.92[JPT][hapmap]
rs9364153	0.89[CEU][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes]
rs9364155	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9364160	0.85[ASN][1000 genomes]
rs9364162	0.86[JPT][hapmap];0.90[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71999800-72033800	Weak transcription	Right Ventricle	heart
2	chr6:72001000-72038800	Weak transcription	Aorta	Aorta
3	chr6:72004200-72041600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:72004400-72043000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:72010800-72038800	Weak transcription	Fetal Kidney	kidney
6	chr6:72011600-72033600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:72013200-72035800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:72018000-72037800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:72018000-72043200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:72018000-72043200	Weak transcription	HSMM	muscle
11	chr6:72020200-72043600	Weak transcription	HSMMtube	muscle
12	chr6:72026800-72035800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:72029400-72033800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:72030000-72033600	Weak transcription	Psoas Muscle	Psoas
15	chr6:72030000-72033600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:72031400-72033600	Weak transcription	Adipose Nuclei	Adipose
17	chr6:72031400-72036000	Weak transcription	Fetal Lung	lung
18	chr6:72031600-72033600	Weak transcription	Left Ventricle	heart
19	chr6:72031600-72040400	Weak transcription	Lung	lung
20	chr6:72031600-72056600	Weak transcription	Placenta	Placenta
21	chr6:72031600-72060200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr6:72031600-72077400	Weak transcription	Pancreas	Pancrea
23	chr6:72033200-72033800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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