Variant report

Variant	rs9354996
Chromosome Location	chr6:72035192-72035193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OGFRL1-5	chr6:72034856-72035245	NONHSAT113489

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1022744	0.81[CHB][hapmap];0.88[CHD][hapmap];0.87[ASN][1000 genomes]
rs10945297	0.83[AMR][1000 genomes]
rs1322761	0.81[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs16881116	0.87[ASN][1000 genomes]
rs2273888	0.87[CHB][hapmap]
rs3756934	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73747109	0.82[AFR][1000 genomes]
rs7753757	0.85[CHD][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs8180646	0.83[AMR][1000 genomes]
rs9294899	0.87[CHB][hapmap]
rs9342829	0.88[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap]
rs9342830	0.83[JPT][hapmap]
rs9342831	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9346452	0.83[AMR][1000 genomes]
rs9346462	0.85[ASN][1000 genomes]
rs9346463	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes]
rs9351807	0.82[ASN][1000 genomes]
rs9354985	0.89[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.92[MEX][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes]
rs9354993	0.90[ASN][1000 genomes]
rs9360444	0.83[AMR][1000 genomes]
rs9360448	0.90[ASN][1000 genomes]
rs9364148	0.83[AMR][1000 genomes]
rs9364149	0.87[CHB][hapmap];0.81[AMR][1000 genomes]
rs9364152	0.86[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs9364153	0.89[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap]
rs9364160	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9364162	0.82[JPT][hapmap];0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9354996	OGFRL1	cis	multi-tissue	Pritchard

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72001000-72038800	Weak transcription	Aorta	Aorta
2	chr6:72004200-72041600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:72004400-72043000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:72010800-72038800	Weak transcription	Fetal Kidney	kidney
5	chr6:72013200-72035800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:72018000-72037800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:72018000-72043200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:72018000-72043200	Weak transcription	HSMM	muscle
9	chr6:72020200-72043600	Weak transcription	HSMMtube	muscle
10	chr6:72026800-72035800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:72031400-72036000	Weak transcription	Fetal Lung	lung
12	chr6:72031600-72040400	Weak transcription	Lung	lung
13	chr6:72031600-72056600	Weak transcription	Placenta	Placenta
14	chr6:72031600-72060200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr6:72031600-72077400	Weak transcription	Pancreas	Pancrea
16	chr6:72033800-72037600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr6:72033800-72046000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr6:72034000-72036400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr6:72034200-72053400	Weak transcription	Psoas Muscle	Psoas
20	chr6:72034200-72058600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:72034400-72052000	Weak transcription	Adipose Nuclei	Adipose
22	chr6:72034600-72035800	Weak transcription	NHDF-Ad	bronchial
23	chr6:72034600-72037400	Weak transcription	Spleen	Spleen
24	chr6:72034800-72036000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:72034800-72037200	Weak transcription	Fetal Muscle Leg	muscle
26	chr6:72034800-72037400	Weak transcription	Right Ventricle	heart
27	chr6:72034800-72060400	Weak transcription	Left Ventricle	heart

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