Variant report

Variant	rs9364153
Chromosome Location	chr6:72012064-72012065
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:72009852..72012666-chr6:72023458..72026008,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1022744	0.82[JPT][hapmap]
rs10945297	0.82[ASN][1000 genomes]
rs12055385	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1322759	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1322761	1.00[JPT][hapmap]
rs16881116	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2208845	0.93[CHB][hapmap];0.94[CHD][hapmap];0.86[GIH][hapmap];0.93[MEX][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2224656	0.91[ASN][1000 genomes]
rs2273888	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.85[LWK][hapmap];0.93[MEX][hapmap];0.97[MKK][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58732838	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59769896	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60555932	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6908858	0.86[ASN][1000 genomes]
rs6935796	0.87[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];0.80[MEX][hapmap];0.86[ASN][1000 genomes]
rs7753757	0.87[ASW][hapmap];0.94[JPT][hapmap];0.80[LWK][hapmap];0.81[YRI][hapmap]
rs7756709	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7773440	0.85[ASN][1000 genomes]
rs9294899	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.85[LWK][hapmap];0.93[MEX][hapmap];0.97[MKK][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9342827	0.81[ASN][1000 genomes]
rs9342828	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9342829	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9342830	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9346451	0.81[ASN][1000 genomes]
rs9346452	0.81[ASN][1000 genomes]
rs9346455	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9346457	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9346459	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9346460	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9346462	0.81[AMR][1000 genomes]
rs9346463	0.89[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes]
rs9351807	0.80[AMR][1000 genomes]
rs9354985	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.86[ASN][1000 genomes]
rs9354989	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9354993	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9354996	0.89[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap]
rs9360444	0.82[ASN][1000 genomes]
rs9360445	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9360447	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9360448	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9364148	0.86[ASN][1000 genomes]
rs9364149	0.85[CEU][hapmap];0.86[ASN][1000 genomes]
rs9364150	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9364151	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9364152	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9364155	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9455418	0.88[ASN][1000 genomes]

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71999600-72012600	Weak transcription	Colonic Mucosa	Colon
2	chr6:71999800-72015200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:71999800-72033800	Weak transcription	Right Ventricle	heart
4	chr6:72000000-72012800	Weak transcription	Brain Germinal Matrix	brain
5	chr6:72000000-72013200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:72000000-72014200	Weak transcription	Thymus	Thymus
7	chr6:72000000-72015400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:72000800-72017600	Weak transcription	Fetal Heart	heart
9	chr6:72001000-72021600	Weak transcription	Fetal Lung	lung
10	chr6:72001000-72038800	Weak transcription	Aorta	Aorta
11	chr6:72001400-72014200	Weak transcription	Fetal Intestine Small	intestine
12	chr6:72001800-72013200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr6:72001800-72020000	Weak transcription	Fetal Brain Female	brain
14	chr6:72002000-72013400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr6:72002000-72014600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr6:72002000-72017600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr6:72002000-72022000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:72002200-72015400	Weak transcription	GM12878-XiMat	blood
19	chr6:72003200-72013200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:72003200-72014400	Strong transcription	Primary B cells from cord blood	blood
21	chr6:72003200-72016200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:72004000-72017000	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr6:72004200-72014400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:72004200-72018800	Weak transcription	Brain Angular Gyrus	brain
25	chr6:72004200-72021800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr6:72004200-72030600	Weak transcription	Lung	lung
27	chr6:72004200-72041600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:72004400-72012600	Weak transcription	Esophagus	oesophagus
29	chr6:72004400-72012600	Weak transcription	Gastric	stomach
30	chr6:72004400-72012600	Weak transcription	Spleen	Spleen
31	chr6:72004400-72013800	Strong transcription	Adipose Nuclei	Adipose
32	chr6:72004400-72014200	Weak transcription	Fetal Intestine Large	intestine
33	chr6:72004400-72014200	Weak transcription	Fetal Stomach	stomach
34	chr6:72004400-72014800	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr6:72004400-72016000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:72004400-72018000	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr6:72004400-72019600	Weak transcription	NH-A	brain
38	chr6:72004400-72021600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr6:72004400-72030800	Weak transcription	Pancreas	Pancrea
40	chr6:72004400-72043000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:72004600-72019200	Weak transcription	Osteobl	bone
42	chr6:72005000-72014200	Strong transcription	HSMM	muscle
43	chr6:72005600-72012400	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr6:72005600-72014200	Weak transcription	Fetal Muscle Trunk	muscle
45	chr6:72005600-72015400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr6:72006800-72013000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr6:72006800-72014200	Weak transcription	Fetal Muscle Leg	muscle
48	chr6:72007000-72012600	Weak transcription	Ovary	ovary
49	chr6:72007000-72014200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr6:72007000-72017800	Weak transcription	NHLF	lung

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