Variant report

Variant	rs73511209
Chromosome Location	chr9:118355813-118355814
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:118355052..118356699-chr9:119256698..119257676,4	MCF-7	breast:
2	chr9:118355579..118356098-chr9:118645880..118646443,2	MCF-7	breast:
3	chr9:118355620..118356478-chr9:119334134..119334708,4	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs59100459	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59449650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73511216	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73511222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73511287	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73511289	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73511302	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73513311	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73513318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73524750	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73524762	0.89[ASN][1000 genomes]
rs73654588	1.00[EUR][1000 genomes]
rs7853762	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7865116	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7868445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1046948	chr9:118185587-118926891	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv916622	chr9:118206309-118952390	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv540207	chr9:118206311-118920304	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv491661	chr9:118206312-118802177	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv831698	chr9:118284259-118446456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1047164	chr9:118286742-118456851	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118351400-118357400	Enhancers	HMEC	breast
2	chr9:118351600-118358200	Enhancers	Osteobl	bone
3	chr9:118351800-118358200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:118351800-118358200	Enhancers	NHDF-Ad	bronchial
5	chr9:118352600-118356200	Weak transcription	Fetal Lung	lung
6	chr9:118352800-118358400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:118353800-118358800	Enhancers	A549	lung
8	chr9:118354000-118357200	Enhancers	NHLF	lung
9	chr9:118354000-118358200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:118354200-118357000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr9:118354200-118357600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:118354200-118358000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr9:118354200-118358200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:118354200-118358200	Enhancers	HSMM	muscle
15	chr9:118354400-118356200	Enhancers	Hela-S3	cervix
16	chr9:118354400-118356200	Weak transcription	HSMMtube	muscle
17	chr9:118354400-118357200	Weak transcription	Adipose Nuclei	Adipose
18	chr9:118354400-118358000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:118354400-118358000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:118354400-118358000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr9:118354400-118358000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr9:118354400-118358000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr9:118354400-118358000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr9:118354400-118358200	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr9:118354400-118358200	Weak transcription	Placenta	Placenta
26	chr9:118354400-118358400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr9:118354400-118358600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:118354400-118359200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr9:118354600-118356200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr9:118354600-118358200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr9:118354600-118358400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr9:118354800-118356200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr9:118354800-118356200	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr9:118354800-118356600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr9:118354800-118356800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr9:118355200-118358400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr9:118355400-118357400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr9:118355400-118357400	Enhancers	NHEK	skin
39	chr9:118355400-118358200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr9:118355400-118358200	Enhancers	NH-A	brain
41	chr9:118355800-118356000	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr9:118355800-118356000	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr9:118355800-118356000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr9:118355800-118356000	Enhancers	Fetal Intestine Small	intestine
45	chr9:118355800-118356000	Enhancers	Rectal Smooth Muscle	rectum
46	chr9:118355800-118356400	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr9:118355800-118357000	Enhancers	Fetal Stomach	stomach
48	chr9:118355800-118358200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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