Variant report

Variant	rs7868445
Chromosome Location	chr9:118353299-118353300
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:118346081..118348622-chr9:118350631..118353525,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DEC1-1	chr9:118352079-118353358	ENSG00000197486

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs59100459	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59449650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73511209	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73511216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73511222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73511287	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73511289	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73511302	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73513311	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73513318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73524750	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73524762	0.89[ASN][1000 genomes]
rs73654588	1.00[EUR][1000 genomes]
rs7853762	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7865116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1046948	chr9:118185587-118926891	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv916622	chr9:118206309-118952390	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv540207	chr9:118206311-118920304	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv491661	chr9:118206312-118802177	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv831698	chr9:118284259-118446456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1047164	chr9:118286742-118456851	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118351400-118354800	Enhancers	Muscle Satellite Cultured Cells	--
2	chr9:118351400-118357400	Enhancers	HMEC	breast
3	chr9:118351600-118353600	Enhancers	NHLF	lung
4	chr9:118351600-118354000	Enhancers	Hela-S3	cervix
5	chr9:118351600-118358200	Enhancers	Osteobl	bone
6	chr9:118351800-118353400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:118351800-118353600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:118351800-118355000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:118351800-118358200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:118351800-118358200	Enhancers	NHDF-Ad	bronchial
11	chr9:118352000-118353800	Weak transcription	A549	lung
12	chr9:118352000-118354800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:118352000-118355000	Enhancers	NH-A	brain
14	chr9:118352200-118353600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:118352400-118353400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr9:118352600-118354200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:118352600-118356200	Weak transcription	Fetal Lung	lung
18	chr9:118352800-118353800	Weak transcription	Adipose Nuclei	Adipose
19	chr9:118352800-118358400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:118353000-118354000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:118353000-118354000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr9:118353000-118354000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr9:118353000-118354000	Weak transcription	HSMMtube	muscle
24	chr9:118353000-118354000	Weak transcription	NHEK	skin
25	chr9:118353000-118354200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr9:118353000-118354200	Weak transcription	HSMM	muscle
27	chr9:118353200-118354000	Weak transcription	HUVEC	blood vessel
28	chr9:118353200-118354200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links