Variant report

Variant	rs73515992
Chromosome Location	chr11:86058301-86058302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86053161..86055810-chr11:86057813..86060670,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149196	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1118332	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17148990	0.88[ASN][1000 genomes]
rs7114910	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73517905	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs73517915	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73517917	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7925989	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7942577	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86014400-86066600	Weak transcription	HSMMtube	muscle
2	chr11:86014600-86066400	Weak transcription	Fetal Kidney	kidney
3	chr11:86014800-86058600	Weak transcription	NHLF	lung
4	chr11:86015000-86061000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr11:86015400-86059600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr11:86022000-86061000	Weak transcription	Esophagus	oesophagus
7	chr11:86023800-86061200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:86025000-86061600	Weak transcription	Psoas Muscle	Psoas
9	chr11:86028400-86059200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:86033400-86066400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:86035400-86066600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:86035600-86058800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:86038000-86059800	Weak transcription	NH-A	brain
14	chr11:86040800-86060800	Weak transcription	Brain Angular Gyrus	brain
15	chr11:86047600-86059400	Weak transcription	NHEK	skin
16	chr11:86047800-86067800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:86048400-86070200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:86049400-86067800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr11:86049600-86059000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr11:86049600-86059200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr11:86049600-86059400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr11:86049600-86060800	Weak transcription	A549	lung
23	chr11:86049600-86062600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr11:86049600-86065200	Weak transcription	Fetal Brain Female	brain
25	chr11:86049600-86066400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:86049600-86066800	Weak transcription	HUVEC	blood vessel
27	chr11:86049600-86067600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr11:86049800-86059600	Weak transcription	Brain Substantia Nigra	brain
29	chr11:86049800-86060800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr11:86049800-86060800	Weak transcription	Colon Smooth Muscle	Colon
31	chr11:86049800-86061800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr11:86049800-86062600	Weak transcription	Stomach Smooth Muscle	stomach
33	chr11:86049800-86068000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr11:86050000-86060000	Weak transcription	HMEC	breast
35	chr11:86050000-86060600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:86050000-86060800	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr11:86050000-86061000	Weak transcription	GM12878-XiMat	blood
38	chr11:86050000-86072000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:86050200-86059400	Weak transcription	Right Ventricle	heart
40	chr11:86050400-86059400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr11:86050400-86059600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr11:86050400-86061400	Weak transcription	Fetal Intestine Small	intestine
43	chr11:86050600-86061000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr11:86050600-86063200	Weak transcription	Brain Germinal Matrix	brain
45	chr11:86050600-86068200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr11:86050800-86059400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr11:86051400-86060800	Weak transcription	Fetal Lung	lung
48	chr11:86054400-86058600	Strong transcription	Primary B cells from peripheral blood	blood
49	chr11:86055000-86058400	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr11:86055000-86059400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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