Variant report

Variant	rs7942577
Chromosome Location	chr11:86082199-86082200
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1118332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824987	1.00[CEU][hapmap]
rs17148990	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105138	1.00[CHB][hapmap];0.86[YRI][hapmap]
rs7114910	1.00[CHB][hapmap];0.93[YRI][hapmap]
rs73515992	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73517905	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs73517915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73517917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925989	1.00[CHB][hapmap];0.93[YRI][hapmap]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86076600-86082400	Weak transcription	NHDF-Ad	bronchial
2	chr11:86080600-86084200	Enhancers	HMEC	breast
3	chr11:86080800-86082800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:86081400-86082600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:86081600-86082600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:86081600-86082800	Weak transcription	Esophagus	oesophagus
7	chr11:86081600-86083000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:86081600-86084600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:86081800-86082400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:86081800-86082400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:86081800-86082800	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr11:86081800-86083000	Enhancers	HUVEC	blood vessel
13	chr11:86081800-86084400	Enhancers	NHEK	skin
14	chr11:86082000-86082400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr11:86082000-86082400	Enhancers	Fetal Brain Female	brain
16	chr11:86082000-86083400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr11:86082000-86084000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links