Variant report

Variant	rs73526147
Chromosome Location	chr6:109653060-109653061
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs60427761	1.00[AFR][1000 genomes]
rs61253616	0.81[AFR][1000 genomes]
rs73527213	1.00[AFR][1000 genomes]
rs73527238	1.00[AFR][1000 genomes]
rs73531318	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5435	chr6:109633035-109669127	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109629600-109654000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:109641000-109653600	Weak transcription	Small Intestine	intestine
3	chr6:109644600-109675200	Weak transcription	Primary T cells from cord blood	blood
4	chr6:109644800-109657400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:109645400-109653600	Weak transcription	Spleen	Spleen
6	chr6:109645400-109662400	Weak transcription	Aorta	Aorta
7	chr6:109649200-109654000	Weak transcription	K562	blood
8	chr6:109649600-109653800	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr6:109650200-109653600	Weak transcription	HepG2	liver
10	chr6:109650200-109653800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:109651600-109653600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr6:109651600-109654600	Enhancers	Stomach Mucosa	stomach
13	chr6:109651800-109653600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr6:109651800-109653800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:109652000-109653600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:109653000-109653200	Enhancers	Gastric	stomach
17	chr6:109653000-109655000	Enhancers	Fetal Intestine Large	intestine
18	chr6:109653000-109655000	Enhancers	Fetal Intestine Small	intestine
19	chr6:109653000-109655000	Enhancers	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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