Variant report

Variant	rs735297
Chromosome Location	chr6:166769536-166769537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166766503..166770484-chr6:166795800..166799342,3	K562	blood:
2	chr6:166763853..166766786-chr6:166768028..166769923,4	K562	blood:

Variant related genes	Relation type
ENSG00000261420	Chromatin interaction
ENSG00000060762	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10806847	0.81[CHD][hapmap]
rs1546853	0.85[ASN][1000 genomes]
rs1546854	1.00[JPT][hapmap]
rs1569459	0.85[ASN][1000 genomes]
rs1569460	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1977049	0.85[ASN][1000 genomes]
rs1997661	0.81[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734605	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3757194	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3757195	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4305699	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4709112	1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[ASN][1000 genomes]
rs4710041	1.00[CHB][hapmap];0.89[CHD][hapmap]
rs4710043	0.85[ASN][1000 genomes]
rs6456078	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6456079	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6456081	0.85[ASN][1000 genomes]
rs6902813	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6905635	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6906844	0.85[ASN][1000 genomes]
rs6909951	0.85[ASN][1000 genomes]
rs6912695	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6918091	0.95[ASN][1000 genomes]
rs6918135	0.85[ASN][1000 genomes]
rs7449629	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7744743	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7752716	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9283865	0.85[ASN][1000 genomes]
rs9295341	0.85[ASN][1000 genomes]
rs9295342	0.85[ASN][1000 genomes]
rs9295343	0.85[ASN][1000 genomes]
rs9295345	0.85[ASN][1000 genomes]
rs9348124	0.85[ASN][1000 genomes]
rs9348125	0.85[ASN][1000 genomes]
rs9355574	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9356478	0.81[CHD][hapmap]
rs9364848	0.85[ASN][1000 genomes]
rs9366007	1.00[CHB][hapmap];0.89[CHD][hapmap]
rs9366009	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	esv1797072	chr6:166766142-166782143	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs735297	C6orf118	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166757000-166779200	Weak transcription	Right Atrium	heart
2	chr6:166765600-166773800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:166765600-166776400	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:166765600-166777000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:166765800-166776200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:166765800-166776200	Weak transcription	Brain Substantia Nigra	brain
7	chr6:166765800-166776600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:166765800-166778000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:166766000-166773800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:166766800-166774600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:166766800-166776400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:166767200-166774000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:166768400-166773200	Weak transcription	HepG2	liver
14	chr6:166768800-166774600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:166769400-166769800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:166769400-166774000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:166769400-166774200	Weak transcription	Lung	lung
18	chr6:166769400-166775600	Weak transcription	Pancreas	Pancrea
19	chr6:166769400-166776600	Weak transcription	Gastric	stomach
20	chr6:166769400-166777800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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