Variant report

Variant	rs9295343
Chromosome Location	chr6:166803251-166803252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166798810..166800534-chr6:166801868..166804204,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FGFR1OP-2	chr6:166801624-166803408	NONHSAT116047

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1546853	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546854	0.91[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1546855	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1569459	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1569460	0.96[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1569461	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1977049	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1977050	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1977051	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1977052	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1977053	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1977054	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1977056	0.89[EUR][1000 genomes]
rs1997661	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2179177	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2343591	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3734605	0.95[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3757194	1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757195	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4305699	0.95[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4709112	1.00[CHB][hapmap]
rs4710041	1.00[CHB][hapmap]
rs4710043	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456078	0.91[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6456079	0.91[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6456081	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902813	0.85[ASN][1000 genomes]
rs6905635	0.94[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6906844	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912695	0.91[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6918091	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6918135	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs735297	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7449629	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744743	0.91[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7752716	0.91[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9283865	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295338	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9295341	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295342	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295344	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9295345	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348123	0.91[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9348124	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348125	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348126	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9355574	0.86[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9355575	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9356482	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9356483	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9364845	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9364846	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9364847	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9364848	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366007	1.00[CHB][hapmap]
rs9366009	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9366010	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv523548	chr6:166796433-166819774	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166797600-166804200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:166797600-166808200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:166797600-166835800	Weak transcription	Right Atrium	heart
4	chr6:166797800-166803800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:166797800-166804000	Weak transcription	Brain Angular Gyrus	brain
6	chr6:166798000-166812200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:166801600-166803400	Weak transcription	Fetal Intestine Small	intestine
8	chr6:166801600-166804200	Enhancers	Liver	Liver
9	chr6:166802000-166803600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:166802200-166803400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr6:166802400-166822400	Weak transcription	Gastric	stomach
12	chr6:166802800-166804600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:166803000-166804600	Enhancers	HepG2	liver
14	chr6:166803200-166803600	Weak transcription	Pancreas	Pancrea
15	chr6:166803200-166804200	Weak transcription	Brain Substantia Nigra	brain

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