Variant report

Variant	rs9366010
Chromosome Location	chr6:166814074-166814075
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:166754582..166756531-chr6:166813895..166816203,2	K562	blood:
2	chr6:166743880..166744818-chr6:166814023..166814944,3	K562	blood:
3	chr6:166688810..166689569-chr6:166813843..166814557,4	MCF-7	breast:
4	chr6:166688791..166689846-chr6:166813636..166815059,15	K562	blood:
5	chr6:166688799..166689857-chr6:166814003..166815015,5	MCF-7	breast:
6	chr6:166726414..166727356-chr6:166813994..166814993,6	K562	blood:
7	chr6:166744901..166745588-chr6:166814062..166814853,2	K562	blood:

Variant related genes	Relation type
ENSG00000198818	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1546853	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1546854	0.89[EUR][1000 genomes]
rs1546855	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1569459	0.89[EUR][1000 genomes]
rs1569460	0.86[EUR][1000 genomes]
rs1569461	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1977049	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1977050	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1977051	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1977052	0.90[EUR][1000 genomes]
rs1977053	0.88[EUR][1000 genomes]
rs1977054	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1977056	0.82[EUR][1000 genomes]
rs2179177	0.86[EUR][1000 genomes]
rs2343591	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3734605	0.85[EUR][1000 genomes]
rs3757194	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3757195	0.91[EUR][1000 genomes]
rs4305699	0.85[EUR][1000 genomes]
rs4710043	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6456078	0.84[EUR][1000 genomes]
rs6456079	0.84[EUR][1000 genomes]
rs6456081	0.90[EUR][1000 genomes]
rs6905635	0.84[EUR][1000 genomes]
rs6906844	0.90[EUR][1000 genomes]
rs6912695	0.85[EUR][1000 genomes]
rs6918135	0.90[EUR][1000 genomes]
rs7449629	0.91[EUR][1000 genomes]
rs7744743	0.83[EUR][1000 genomes]
rs9283865	0.91[EUR][1000 genomes]
rs9295338	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9295341	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9295342	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9295343	0.90[EUR][1000 genomes]
rs9295344	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9295345	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9348123	0.81[EUR][1000 genomes]
rs9348124	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9348125	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9348126	0.90[EUR][1000 genomes]
rs9355574	0.83[EUR][1000 genomes]
rs9355575	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9356482	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9356483	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9364845	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9364846	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9364847	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9364848	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9366009	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv523548	chr6:166796433-166819774	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166797600-166835800	Weak transcription	Right Atrium	heart
2	chr6:166802400-166822400	Weak transcription	Gastric	stomach
3	chr6:166804200-166822200	Weak transcription	Brain Angular Gyrus	brain
4	chr6:166808200-166911800	Weak transcription	Psoas Muscle	Psoas
5	chr6:166809200-166814200	Weak transcription	Fetal Heart	heart
6	chr6:166812200-166814400	Enhancers	Liver	Liver
7	chr6:166812200-166822200	Weak transcription	Brain Anterior Caudate	brain
8	chr6:166813000-166822400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:166813200-166814200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:166813200-166814400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:166813200-166822400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr6:166813400-166818600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:166813800-166814400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:166813800-166814400	Enhancers	Adipose Nuclei	Adipose
15	chr6:166813800-166814400	Flanking Active TSS	HepG2	liver

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