Variant report

Variant	rs9366009
Chromosome Location	chr6:166787434-166787435
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:166786519-166787618	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166786321..166788886-chr6:166835816..166837569,2	K562	blood:

Variant related genes	Relation type
MPC1	TF binding region
ENSG00000071242	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1546853	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1546854	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1546855	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1569459	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1569460	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1569461	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1977049	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1977050	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1977051	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1977052	0.94[EUR][1000 genomes]
rs1977053	0.93[EUR][1000 genomes]
rs1977054	0.93[EUR][1000 genomes]
rs1977055	0.82[AMR][1000 genomes]
rs1977056	0.92[EUR][1000 genomes]
rs1997661	0.90[ASN][1000 genomes]
rs2179177	0.88[EUR][1000 genomes]
rs2343591	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3734605	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757194	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3757195	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4305699	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4710043	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6456078	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456079	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456081	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6902813	0.90[ASN][1000 genomes]
rs6905635	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906844	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6912695	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918091	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6918135	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs735297	0.90[ASN][1000 genomes]
rs7449594	0.81[EUR][1000 genomes]
rs7449629	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7744743	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7752716	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9283865	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9295338	0.93[EUR][1000 genomes]
rs9295341	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9295342	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9295343	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9295344	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9295345	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9348123	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9348124	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9348125	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9348126	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9355574	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9355575	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9356482	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9356483	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9364845	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9364846	0.90[EUR][1000 genomes]
rs9364847	0.88[EUR][1000 genomes]
rs9364848	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9366010	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	esv3376653	chr6:166783590-166798116	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166773200-166794600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:166773400-166790000	Weak transcription	Fetal Brain Male	brain
3	chr6:166774400-166790600	Weak transcription	Psoas Muscle	Psoas
4	chr6:166774800-166795000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:166775000-166793800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:166775200-166788400	Weak transcription	HMEC	breast
7	chr6:166775800-166794800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:166777400-166795400	Weak transcription	Gastric	stomach
9	chr6:166777800-166788400	Weak transcription	NHEK	skin
10	chr6:166778200-166790600	Weak transcription	Right Ventricle	heart
11	chr6:166778200-166790800	Weak transcription	Fetal Brain Female	brain
12	chr6:166778200-166792800	Weak transcription	Aorta	Aorta
13	chr6:166778200-166794600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr6:166778200-166795000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:166778400-166790600	Weak transcription	Pancreas	Pancrea
16	chr6:166778400-166792600	Weak transcription	Lung	lung
17	chr6:166778400-166794600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:166778400-166794600	Weak transcription	Fetal Intestine Small	intestine
19	chr6:166778400-166794600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr6:166778400-166794800	Weak transcription	Fetal Stomach	stomach
21	chr6:166778400-166795000	Weak transcription	Colonic Mucosa	Colon
22	chr6:166778600-166794600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr6:166778600-166794600	Weak transcription	Colon Smooth Muscle	Colon
24	chr6:166779200-166788400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr6:166779200-166793400	Weak transcription	K562	blood
26	chr6:166779400-166794600	Weak transcription	HSMM	muscle
27	chr6:166779400-166794800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr6:166779600-166789200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:166779600-166790600	Weak transcription	Left Ventricle	heart
30	chr6:166779600-166791400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr6:166779600-166791800	Weak transcription	Brain Germinal Matrix	brain
32	chr6:166779600-166792800	Weak transcription	Ovary	ovary
33	chr6:166779600-166794600	Weak transcription	Brain Angular Gyrus	brain
34	chr6:166779600-166794600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr6:166779600-166794600	Weak transcription	Brain Substantia Nigra	brain
36	chr6:166779600-166794600	Weak transcription	Thymus	Thymus
37	chr6:166779600-166794800	Weak transcription	Fetal Intestine Large	intestine
38	chr6:166779800-166793200	Weak transcription	Brain Anterior Caudate	brain
39	chr6:166779800-166794400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr6:166779800-166794600	Weak transcription	NH-A	brain
41	chr6:166780400-166793200	Weak transcription	Adipose Nuclei	Adipose
42	chr6:166780400-166794600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:166780600-166788000	Weak transcription	GM12878-XiMat	blood
44	chr6:166780600-166792200	Weak transcription	Duodenum Mucosa	Duodenum
45	chr6:166780600-166794400	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr6:166780600-166794600	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr6:166780600-166794600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr6:166780600-166794600	Weak transcription	Fetal Lung	lung
49	chr6:166780600-166794800	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr6:166780600-166795400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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