Variant report

Variant	rs2179177
Chromosome Location	chr6:166806793-166806794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1546853	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1546854	0.93[EUR][1000 genomes]
rs1546855	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1569459	0.93[EUR][1000 genomes]
rs1569460	0.89[EUR][1000 genomes]
rs1569461	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1977049	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1977050	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1977051	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1977052	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1977053	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1977054	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1977056	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2343591	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3734605	0.89[EUR][1000 genomes]
rs3757194	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3757195	0.94[EUR][1000 genomes]
rs4305699	0.87[EUR][1000 genomes]
rs4710043	0.90[EUR][1000 genomes]
rs6456078	0.87[EUR][1000 genomes]
rs6456079	0.87[EUR][1000 genomes]
rs6456081	0.94[EUR][1000 genomes]
rs6905635	0.87[EUR][1000 genomes]
rs6906844	0.94[EUR][1000 genomes]
rs6912695	0.87[EUR][1000 genomes]
rs6918135	0.94[EUR][1000 genomes]
rs7449629	0.94[EUR][1000 genomes]
rs7744743	0.85[EUR][1000 genomes]
rs7752716	0.81[EUR][1000 genomes]
rs9283865	0.94[EUR][1000 genomes]
rs9295338	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9295341	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9295342	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9295343	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9295344	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295345	0.91[EUR][1000 genomes]
rs9348123	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9348124	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9348125	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9348126	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9355574	0.85[EUR][1000 genomes]
rs9355575	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9356482	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9356483	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9364845	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9364846	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9364847	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9364848	0.91[EUR][1000 genomes]
rs9366009	0.88[EUR][1000 genomes]
rs9366010	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv523548	chr6:166796433-166819774	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166797600-166808200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:166797600-166835800	Weak transcription	Right Atrium	heart
3	chr6:166798000-166812200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:166802400-166822400	Weak transcription	Gastric	stomach
5	chr6:166804200-166807000	Weak transcription	Liver	Liver
6	chr6:166804200-166822200	Weak transcription	Brain Angular Gyrus	brain
7	chr6:166804400-166807400	Weak transcription	Brain Substantia Nigra	brain
8	chr6:166804800-166812200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:166805800-166812800	Enhancers	HepG2	liver

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