Variant report

Variant	rs73536562
Chromosome Location	chr9:98774068-98774069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs58575546	1.00[AMR][1000 genomes]
rs59245543	1.00[AMR][1000 genomes]
rs59375678	1.00[AMR][1000 genomes]
rs73654829	1.00[AMR][1000 genomes]
rs73654853	1.00[AMR][1000 genomes]
rs9785250	1.00[AMR][1000 genomes]
rs9785268	1.00[AMR][1000 genomes]
rs9942940	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	nsv893600	chr9:98608989-98775459	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98706400-98777400	Weak transcription	Psoas Muscle	Psoas
2	chr9:98714000-98782600	Weak transcription	HUVEC	blood vessel
3	chr9:98734600-98782400	Weak transcription	NHEK	skin
4	chr9:98735400-98778400	Weak transcription	Hela-S3	cervix
5	chr9:98736600-98778800	Weak transcription	Fetal Brain Male	brain
6	chr9:98741800-98778600	Weak transcription	NH-A	brain
7	chr9:98747800-98782800	Weak transcription	Fetal Kidney	kidney
8	chr9:98748000-98782600	Weak transcription	HMEC	breast
9	chr9:98748400-98782800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr9:98748600-98781200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr9:98753400-98774200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:98753600-98774400	Weak transcription	Brain Anterior Caudate	brain
13	chr9:98759000-98780200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr9:98765000-98775200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr9:98765000-98777600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr9:98765800-98781600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr9:98766400-98779800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:98766400-98780800	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr9:98766600-98774600	Strong transcription	Primary B cells from peripheral blood	blood
20	chr9:98766600-98777400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:98766800-98775400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr9:98766800-98776800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr9:98766800-98777000	Strong transcription	Fetal Muscle Leg	muscle
24	chr9:98766800-98777200	Strong transcription	Fetal Intestine Large	intestine
25	chr9:98767600-98777400	Strong transcription	Primary B cells from cord blood	blood
26	chr9:98767800-98775200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr9:98768600-98782600	Weak transcription	Colon Smooth Muscle	Colon
28	chr9:98769600-98776400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr9:98770000-98775600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr9:98770200-98774600	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr9:98770200-98776200	Weak transcription	Colonic Mucosa	Colon
32	chr9:98770400-98776400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr9:98770800-98775200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr9:98771200-98776600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr9:98771200-98777200	Strong transcription	HepG2	liver
36	chr9:98771200-98781200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr9:98771600-98776400	Weak transcription	Gastric	stomach
38	chr9:98771600-98776400	Weak transcription	Lung	lung
39	chr9:98771600-98778400	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr9:98771600-98779200	Weak transcription	Fetal Brain Female	brain
41	chr9:98771600-98779600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr9:98771600-98779800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr9:98771600-98781600	Weak transcription	Brain Cingulate Gyrus	brain
44	chr9:98771600-98782600	Weak transcription	Placenta	Placenta
45	chr9:98771600-98782800	Weak transcription	A549	lung
46	chr9:98771600-98783000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr9:98771800-98774400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr9:98771800-98774800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr9:98771800-98775400	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr9:98771800-98776400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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