Variant report

Variant	rs73654853
Chromosome Location	chr9:98877564-98877565
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs59375678	1.00[AMR][1000 genomes]
rs7023428	1.00[AMR][1000 genomes]
rs73536562	1.00[AMR][1000 genomes]
rs73654829	1.00[AMR][1000 genomes]
rs8190481	1.00[AMR][1000 genomes]
rs8190482	1.00[AMR][1000 genomes]
rs8190488	1.00[AMR][1000 genomes]
rs8190493	1.00[AMR][1000 genomes]
rs8190497	1.00[AMR][1000 genomes]
rs8190506	1.00[AMR][1000 genomes]
rs9785250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9785268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9942940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	nsv532433	chr9:98857250-99382944	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98870600-98880000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:98874400-98877600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:98875800-98887400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:98876200-98878600	Enhancers	Brain Angular Gyrus	brain
5	chr9:98877000-98877600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr9:98877000-98878800	Flanking Active TSS	Pancreas	Pancrea
7	chr9:98877200-98877600	Enhancers	Brain Cingulate Gyrus	brain
8	chr9:98877200-98877600	Enhancers	Fetal Lung	lung
9	chr9:98877200-98878000	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr9:98877200-98878400	Flanking Active TSS	Brain Substantia Nigra	brain
11	chr9:98877200-98878600	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr9:98877400-98877600	Flanking Active TSS	Brain Hippocampus Middle	brain
13	chr9:98877400-98877800	Flanking Active TSS	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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