Variant report

Variant	rs7023428
Chromosome Location	chr9:99075448-99075449
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs73654853	1.00[AMR][1000 genomes]
rs8190480	1.00[YRI][hapmap]
rs8190481	1.00[AMR][1000 genomes]
rs8190482	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs8190488	1.00[AMR][1000 genomes]
rs8190493	1.00[AMR][1000 genomes]
rs8190497	1.00[AMR][1000 genomes]
rs8190506	1.00[AMR][1000 genomes]
rs9785250	1.00[AMR][1000 genomes]
rs9785268	1.00[AMR][1000 genomes]
rs9942940	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532433	chr9:98857250-99382944	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99056800-99075600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr9:99071800-99093400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:99073400-99075600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:99074000-99075600	Weak transcription	Brain Substantia Nigra	brain
5	chr9:99074200-99105200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr9:99074200-99107800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr9:99074600-99079600	Weak transcription	Fetal Heart	heart
8	chr9:99074600-99105600	Weak transcription	Colon Smooth Muscle	Colon
9	chr9:99074800-99076200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:99074800-99083200	Weak transcription	Right Ventricle	heart
11	chr9:99075200-99076400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
12	chr9:99075200-99076800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
13	chr9:99075400-99075600	ZNF genes & repeats	Ovary	ovary
14	chr9:99075400-99075800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:99075400-99075800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr9:99075400-99076000	ZNF genes & repeats	Brain Hippocampus Middle	brain
17	chr9:99075400-99076400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:99075400-99076400	Strong transcription	Liver	Liver
19	chr9:99075400-99076600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr9:99075400-99076600	ZNF genes & repeats	Stomach Smooth Muscle	stomach

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