Variant report

Variant	rs9942940
Chromosome Location	chr9:98881921-98881922
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs59375678	1.00[AMR][1000 genomes]
rs7023428	1.00[AMR][1000 genomes]
rs73536562	1.00[AMR][1000 genomes]
rs73654829	1.00[AMR][1000 genomes]
rs73654853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8190481	1.00[AMR][1000 genomes]
rs8190482	1.00[AMR][1000 genomes]
rs8190488	1.00[AMR][1000 genomes]
rs8190493	1.00[AMR][1000 genomes]
rs8190497	1.00[AMR][1000 genomes]
rs8190506	1.00[AMR][1000 genomes]
rs9785250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9785268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	nsv532433	chr9:98857250-99382944	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98875800-98887400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:98879600-98888400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr9:98880400-98882600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr9:98880400-98886600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr9:98880600-98882600	Weak transcription	Fetal Lung	lung
6	chr9:98880600-98882600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr9:98880800-98891600	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:98881600-98882800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr9:98881600-98884600	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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