Variant report

Variant	rs73537753
Chromosome Location	chr19:21311481-21311482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10404877	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10411360	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10411471	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10413561	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10425562	0.85[AMR][1000 genomes]
rs13345905	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs13346419	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28500793	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58830061	0.85[AFR][1000 genomes]
rs73537710	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73537721	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385528	chr19:21030777-21495566	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv817536	chr19:21041855-21348237	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv960811	chr19:21200306-21371757	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv3399352	chr19:21232738-21423323	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv1065384	chr19:21249321-21350698	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv911413	chr19:21263518-21347598	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	esv3319019	chr19:21268262-21336383	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	esv3319020	chr19:21268262-21336383	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	esv7695	chr19:21268276-21328430	Transcr. at gene 5' and 3' Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
10	esv5909	chr19:21272333-21334753	Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
11	esv3420290	chr19:21272477-21336432	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
12	esv3391713	chr19:21272485-21334631	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
13	esv5243	chr19:21272548-21334670	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
14	esv7204	chr19:21274198-21336396	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
15	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
16	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
17	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21300400-21311600	Weak transcription	Fetal Kidney	kidney
2	chr19:21301000-21311800	Weak transcription	Ovary	ovary
3	chr19:21301200-21311800	Weak transcription	Fetal Thymus	thymus
4	chr19:21302400-21312200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr19:21303000-21311600	Weak transcription	Dnd41	blood
6	chr19:21303200-21311800	Weak transcription	Fetal Intestine Small	intestine
7	chr19:21303200-21312000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr19:21303200-21312600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr19:21303800-21311600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr19:21304200-21313000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr19:21305600-21312000	Weak transcription	Fetal Lung	lung
12	chr19:21305600-21312200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr19:21305800-21313000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr19:21305800-21313000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr19:21309400-21313400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr19:21309800-21311800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr19:21310600-21312200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr19:21310600-21312400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr19:21310600-21312400	Enhancers	HepG2	liver
20	chr19:21310600-21313000	Enhancers	Fetal Intestine Large	intestine
21	chr19:21311000-21311600	Weak transcription	Thymus	Thymus
22	chr19:21311000-21311600	Enhancers	K562	blood
23	chr19:21311200-21311600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr19:21311200-21311600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr19:21311200-21312200	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr19:21311200-21312600	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr19:21311200-21313400	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr19:21311400-21312000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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