Variant report

Variant	rs73538149
Chromosome Location	chr11:71049656-71049657
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11233147	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233174	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788635	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12794450	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs34247947	0.98[ASN][1000 genomes]
rs3893148	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7106184	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112442	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536062	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536063	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7358414	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7932973	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7938712	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71048200-71051200	Enhancers	Fetal Stomach	stomach
2	chr11:71048200-71052000	Enhancers	Fetal Lung	lung
3	chr11:71048600-71050200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:71048800-71050200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:71048800-71050200	Weak transcription	Esophagus	oesophagus
6	chr11:71049000-71050200	Weak transcription	Fetal Intestine Large	intestine
7	chr11:71049200-71051400	Bivalent Enhancer	Fetal Muscle Leg	muscle
8	chr11:71049400-71050000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr11:71049400-71050200	Enhancers	NHLF	lung
10	chr11:71049400-71051400	Enhancers	Fetal Thymus	thymus
11	chr11:71049600-71049800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:71049600-71049800	Flanking Active TSS	Stomach Smooth Muscle	stomach
13	chr11:71049600-71050000	Weak transcription	Fetal Intestine Small	intestine
14	chr11:71049600-71050200	Enhancers	Ovary	ovary
15	chr11:71049600-71050600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:71049600-71050800	Enhancers	Rectal Smooth Muscle	rectum
17	chr11:71049600-71052000	Enhancers	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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