Variant report

Variant	rs73539285
Chromosome Location	chr9:98062664-98062665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98062229..98064595-chr9:98064596..98066110,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2404458	1.00[AMR][1000 genomes]
rs3780566	1.00[AMR][1000 genomes]
rs4647430	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647464	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647474	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647487	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647502	1.00[AMR][1000 genomes]
rs4647509	1.00[AMR][1000 genomes]
rs57641389	1.00[AMR][1000 genomes]
rs60228132	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61358915	1.00[AMR][1000 genomes]
rs73528487	1.00[AMR][1000 genomes]
rs73534874	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534875	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73539228	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7859625	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98046600-98063000	Weak transcription	Fetal Stomach	stomach
2	chr9:98050200-98067400	Weak transcription	A549	lung
3	chr9:98054800-98063000	Weak transcription	Lung	lung
4	chr9:98055000-98068600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:98055200-98065600	Weak transcription	Thymus	Thymus
6	chr9:98055400-98066000	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:98059600-98063000	Weak transcription	Osteobl	bone
8	chr9:98059600-98067000	Weak transcription	GM12878-XiMat	blood
9	chr9:98059800-98063000	Weak transcription	NHLF	lung
10	chr9:98059800-98063200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:98059800-98064400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr9:98059800-98068000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:98059800-98068600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:98060200-98067400	Weak transcription	HSMM	muscle
15	chr9:98060400-98075000	Weak transcription	NHEK	skin
16	chr9:98060800-98063000	Weak transcription	Ovary	ovary
17	chr9:98061000-98063200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:98061000-98067200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr9:98061000-98068800	Weak transcription	Small Intestine	intestine
20	chr9:98061400-98063000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:98061400-98064400	Weak transcription	Primary T cells from cord blood	blood
22	chr9:98061800-98067400	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links