Variant report

Variant	rs4647474
Chromosome Location	chr9:97954592-97954593
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97950017..97951848-chr9:97952772..97954598,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs2404458	1.00[ASW][hapmap];1.00[LWK][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3780566	1.00[ASW][hapmap];1.00[LWK][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647430	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647464	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647487	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647502	1.00[ASW][hapmap];1.00[LWK][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647509	1.00[ASW][hapmap];1.00[LWK][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647510	1.00[ASW][hapmap];1.00[LWK][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes]
rs4647516	1.00[ASW][hapmap];1.00[LWK][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes]
rs57641389	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60228132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61358915	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73528484	0.93[AFR][1000 genomes]
rs73528487	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534896	0.88[AFR][1000 genomes]
rs73539228	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73539285	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7859625	0.86[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97941000-97959800	Weak transcription	Pancreas	Pancrea
2	chr9:97946200-97955600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:97946200-97955800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:97948800-97955600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:97948800-97955600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:97950800-97959600	Weak transcription	Gastric	stomach
7	chr9:97951800-97955000	Weak transcription	Thymus	Thymus
8	chr9:97952200-97955600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr9:97952200-97960200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:97952400-97955400	Weak transcription	GM12878-XiMat	blood
11	chr9:97952600-97963200	Weak transcription	Spleen	Spleen
12	chr9:97952600-97969400	Weak transcription	Fetal Intestine Small	intestine
13	chr9:97953000-97958800	Weak transcription	Right Ventricle	heart
14	chr9:97953000-97958800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr9:97953000-97959000	Weak transcription	Esophagus	oesophagus
16	chr9:97953000-97959800	Weak transcription	Right Atrium	heart
17	chr9:97953000-97959800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr9:97953000-97960000	Weak transcription	Fetal Stomach	stomach
19	chr9:97953000-97961600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:97953000-97961600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr9:97953200-97955400	Weak transcription	Aorta	Aorta
22	chr9:97953600-97959800	Weak transcription	Lung	lung
23	chr9:97953800-97959200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr9:97954200-97959800	Weak transcription	Ovary	ovary
25	chr9:97954400-97955600	Enhancers	HUVEC	blood vessel

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