Variant report

Variant	rs73534896
Chromosome Location	chr9:97973067-97973068
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97971151..97973628-chr9:97977653..97979604,2	K562	blood:
2	chr9:97968772..97971256-chr9:97972231..97974101,2	MCF-7	breast:
3	chr9:97972128..97974597-chr9:97977453..97979153,3	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs12683182	0.89[ASN][1000 genomes]
rs12684215	0.89[ASN][1000 genomes]
rs12685903	0.89[ASN][1000 genomes]
rs12686588	0.89[ASN][1000 genomes]
rs1875835	0.89[ASN][1000 genomes]
rs1886993	0.89[ASN][1000 genomes]
rs2121200	0.89[ASN][1000 genomes]
rs2404458	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs35108112	0.89[ASN][1000 genomes]
rs3780566	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4647360	0.89[ASN][1000 genomes]
rs4647367	0.89[ASN][1000 genomes]
rs4647378	0.89[ASN][1000 genomes]
rs4647386	0.89[ASN][1000 genomes]
rs4647397	0.89[ASN][1000 genomes]
rs4647398	0.89[ASN][1000 genomes]
rs4647402	0.89[ASN][1000 genomes]
rs4647405	0.89[ASN][1000 genomes]
rs4647408	0.89[ASN][1000 genomes]
rs4647414	0.89[ASN][1000 genomes]
rs4647430	0.82[AFR][1000 genomes]
rs4647436	0.89[ASN][1000 genomes]
rs4647437	0.89[ASN][1000 genomes]
rs4647449	0.89[ASN][1000 genomes]
rs4647464	0.88[AFR][1000 genomes]
rs4647465	0.89[ASN][1000 genomes]
rs4647466	0.89[ASN][1000 genomes]
rs4647472	0.89[ASN][1000 genomes]
rs4647473	0.89[ASN][1000 genomes]
rs4647474	0.88[AFR][1000 genomes]
rs4647477	0.89[ASN][1000 genomes]
rs4647484	0.89[ASN][1000 genomes]
rs4647485	0.89[ASN][1000 genomes]
rs4647486	0.89[ASN][1000 genomes]
rs4647487	0.88[AFR][1000 genomes]
rs4647491	0.89[ASN][1000 genomes]
rs4647493	0.89[ASN][1000 genomes]
rs4647502	0.82[AFR][1000 genomes]
rs4647508	0.89[ASN][1000 genomes]
rs4647509	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4647510	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4647514	0.89[ASN][1000 genomes]
rs4647516	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs57641389	0.82[AFR][1000 genomes]
rs60228132	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs61358915	0.82[AFR][1000 genomes]
rs7037729	0.89[ASN][1000 genomes]
rs73528484	0.82[AFR][1000 genomes]
rs73528487	0.82[AFR][1000 genomes]
rs73530498	0.89[ASN][1000 genomes]
rs73532103	0.89[ASN][1000 genomes]
rs73534874	0.88[AFR][1000 genomes]
rs73534875	0.88[AFR][1000 genomes]
rs73534887	0.89[ASN][1000 genomes]
rs73534888	0.89[ASN][1000 genomes]
rs73534898	0.89[ASN][1000 genomes]
rs73539228	0.82[AFR][1000 genomes]
rs7854840	0.89[ASN][1000 genomes]
rs7859625	0.82[AFR][1000 genomes]
rs9792415	0.89[ASN][1000 genomes]
rs9792481	0.89[ASN][1000 genomes]
rs9792533	0.89[ASN][1000 genomes]
rs9792691	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
2	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97962000-97980600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:97963000-97993400	Weak transcription	Hela-S3	cervix
3	chr9:97968600-97976800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr9:97968800-97973400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr9:97969000-97973400	Weak transcription	Fetal Kidney	kidney
6	chr9:97969400-97973200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:97969600-97973400	Weak transcription	Ovary	ovary
8	chr9:97969800-97976400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:97969800-97976800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:97969800-97981200	Weak transcription	Fetal Stomach	stomach
11	chr9:97969800-97986400	Weak transcription	Fetal Intestine Small	intestine
12	chr9:97970000-97973200	Weak transcription	Fetal Lung	lung
13	chr9:97970000-97973200	Weak transcription	HSMMtube	muscle
14	chr9:97970000-97973600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:97970000-97978200	Weak transcription	HepG2	liver
16	chr9:97970200-97980800	Weak transcription	Fetal Intestine Large	intestine
17	chr9:97972000-97973400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr9:97972000-97980800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr9:97972400-97977600	Weak transcription	Primary T cells from cord blood	blood
20	chr9:97972800-97974000	Enhancers	Fetal Heart	heart
21	chr9:97973000-97974200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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