Variant report

Variant	rs4647360
Chromosome Location	chr9:98078319-98078320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:98078160..98080305-chr9:98637483..98639375,2	MCF-7	breast:
2	chr9:98066646..98069496-chr9:98077286..98078854,2	K562	blood:
3	chr9:98059172..98061613-chr9:98077027..98078592,2	MCF-7	breast:
4	chr9:98054521..98056977-chr9:98076532..98078926,2	K562	blood:
5	chr17:40540218..40543029-chr9:98077707..98079432,2	MCF-7	breast:
6	chr9:98067922..98070273-chr9:98076676..98079113,2	MCF-7	breast:
7	chr9:98078123..98080907-chr9:98268002..98270715,3	K562	blood:
8	chr9:98078194..98081816-chr9:98277777..98279552,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000182150	Chromatin interaction
ENSG00000175611	Chromatin interaction
ENSG00000168610	Chromatin interaction
ENSG00000271155	Chromatin interaction
ENSG00000230221	Chromatin interaction
ENSG00000185920	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs12683182	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12684215	1.00[ASN][1000 genomes]
rs12685903	1.00[ASN][1000 genomes]
rs12686588	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1875835	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1886993	1.00[ASN][1000 genomes]
rs2121200	1.00[ASN][1000 genomes]
rs2404458	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs35108112	1.00[ASN][1000 genomes]
rs3780566	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs400727	0.86[JPT][hapmap]
rs4647348	0.89[ASN][1000 genomes]
rs4647352	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4647354	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4647367	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647378	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647386	1.00[ASN][1000 genomes]
rs4647387	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4647397	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647398	1.00[ASN][1000 genomes]
rs4647402	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647405	1.00[ASN][1000 genomes]
rs4647408	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647414	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647436	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647437	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647449	1.00[ASN][1000 genomes]
rs4647465	1.00[ASN][1000 genomes]
rs4647466	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647472	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647473	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647477	1.00[ASN][1000 genomes]
rs4647484	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647485	1.00[ASN][1000 genomes]
rs4647486	1.00[ASN][1000 genomes]
rs4647491	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647493	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647508	1.00[ASN][1000 genomes]
rs4647509	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647510	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647514	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647516	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647521	0.88[ASN][1000 genomes]
rs60228132	1.00[ASN][1000 genomes]
rs7037729	1.00[ASN][1000 genomes]
rs73530498	1.00[ASN][1000 genomes]
rs73532103	1.00[ASN][1000 genomes]
rs73534887	1.00[ASN][1000 genomes]
rs73534888	1.00[ASN][1000 genomes]
rs73534896	0.89[ASN][1000 genomes]
rs73534898	1.00[ASN][1000 genomes]
rs7854840	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9792415	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9792481	1.00[ASN][1000 genomes]
rs9792533	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9792691	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98075400-98078400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:98075400-98078600	Weak transcription	Stomach Mucosa	stomach
3	chr9:98075600-98078600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:98075600-98079000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr9:98075600-98079200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:98075800-98078400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr9:98075800-98078600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:98075800-98078600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:98075800-98078600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr9:98075800-98078600	Weak transcription	Primary T cells from cord blood	blood
11	chr9:98075800-98078600	Weak transcription	Adipose Nuclei	Adipose
12	chr9:98075800-98078600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr9:98075800-98078600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr9:98075800-98078600	Weak transcription	Brain Substantia Nigra	brain
15	chr9:98075800-98078600	Weak transcription	Colonic Mucosa	Colon
16	chr9:98075800-98078600	Weak transcription	Pancreas	Pancrea
17	chr9:98075800-98078600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr9:98075800-98078600	Weak transcription	Right Ventricle	heart
19	chr9:98075800-98078600	Weak transcription	Thymus	Thymus
20	chr9:98075800-98078600	Weak transcription	HSMM	muscle
21	chr9:98075800-98078600	Weak transcription	HSMMtube	muscle
22	chr9:98075800-98078800	Weak transcription	Placenta	Placenta
23	chr9:98075800-98078800	Weak transcription	Psoas Muscle	Psoas
24	chr9:98075800-98079000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr9:98075800-98079000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr9:98075800-98079000	Weak transcription	Esophagus	oesophagus
27	chr9:98075800-98079000	Weak transcription	Left Ventricle	heart
28	chr9:98075800-98079000	Weak transcription	Ovary	ovary
29	chr9:98075800-98079200	Weak transcription	Gastric	stomach
30	chr9:98075800-98079200	Weak transcription	Small Intestine	intestine
31	chr9:98076000-98078400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr9:98076000-98078400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr9:98076000-98078400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr9:98076000-98078600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr9:98076000-98078600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr9:98076000-98078600	Weak transcription	Brain Anterior Caudate	brain
37	chr9:98076000-98078600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr9:98076000-98078600	Weak transcription	Brain Hippocampus Middle	brain
39	chr9:98076000-98078600	Weak transcription	Colon Smooth Muscle	Colon
40	chr9:98076000-98078600	Weak transcription	Fetal Brain Male	brain
41	chr9:98076000-98078600	Weak transcription	Fetal Muscle Trunk	muscle
42	chr9:98076000-98078600	Weak transcription	Stomach Smooth Muscle	stomach
43	chr9:98076000-98078600	Weak transcription	NH-A	brain
44	chr9:98076000-98078600	Weak transcription	Osteobl	bone
45	chr9:98076000-98078800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr9:98076000-98078800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr9:98076000-98078800	Weak transcription	Right Atrium	heart
48	chr9:98076200-98078400	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr9:98076200-98078400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr9:98076200-98078400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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