Variant report

Variant	rs35108112
Chromosome Location	chr15:58608614-58608615
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs12683182	1.00[ASN][1000 genomes]
rs12684215	1.00[ASN][1000 genomes]
rs12685903	1.00[ASN][1000 genomes]
rs12686588	1.00[ASN][1000 genomes]
rs1800360	0.83[AMR][1000 genomes]
rs1875835	1.00[ASN][1000 genomes]
rs1886993	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2121200	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2404458	1.00[ASN][1000 genomes]
rs3780566	1.00[ASN][1000 genomes]
rs4647348	0.89[ASN][1000 genomes]
rs4647354	0.89[ASN][1000 genomes]
rs4647360	1.00[ASN][1000 genomes]
rs4647367	1.00[ASN][1000 genomes]
rs4647378	1.00[ASN][1000 genomes]
rs4647386	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4647387	0.89[ASN][1000 genomes]
rs4647397	1.00[ASN][1000 genomes]
rs4647398	1.00[ASN][1000 genomes]
rs4647402	1.00[ASN][1000 genomes]
rs4647405	1.00[ASN][1000 genomes]
rs4647408	1.00[ASN][1000 genomes]
rs4647414	1.00[ASN][1000 genomes]
rs4647436	1.00[ASN][1000 genomes]
rs4647437	1.00[ASN][1000 genomes]
rs4647449	1.00[ASN][1000 genomes]
rs4647455	0.83[AMR][1000 genomes]
rs4647465	1.00[ASN][1000 genomes]
rs4647466	1.00[ASN][1000 genomes]
rs4647472	1.00[ASN][1000 genomes]
rs4647473	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4647477	1.00[ASN][1000 genomes]
rs4647484	1.00[ASN][1000 genomes]
rs4647485	1.00[ASN][1000 genomes]
rs4647486	1.00[ASN][1000 genomes]
rs4647491	1.00[ASN][1000 genomes]
rs4647493	1.00[ASN][1000 genomes]
rs4647505	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647508	1.00[ASN][1000 genomes]
rs4647509	1.00[ASN][1000 genomes]
rs4647510	1.00[ASN][1000 genomes]
rs4647514	1.00[ASN][1000 genomes]
rs4647516	1.00[ASN][1000 genomes]
rs4647521	0.88[ASN][1000 genomes]
rs57471585	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60228132	1.00[ASN][1000 genomes]
rs7034939	0.83[AMR][1000 genomes]
rs7037729	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73528466	0.83[AMR][1000 genomes]
rs73528478	0.83[AMR][1000 genomes]
rs73530498	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73532103	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73532167	0.83[AMR][1000 genomes]
rs73532195	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532199	0.83[AMR][1000 genomes]
rs73534887	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73534888	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73534896	0.89[ASN][1000 genomes]
rs73534898	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73537212	0.83[AMR][1000 genomes]
rs73538039	0.83[AMR][1000 genomes]
rs73539203	0.83[AMR][1000 genomes]
rs73541330	0.83[AMR][1000 genomes]
rs7854840	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9792415	1.00[ASN][1000 genomes]
rs9792481	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9792533	1.00[ASN][1000 genomes]
rs9792691	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv904266	chr15:58580921-58689187	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58607600-58610600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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