Variant report

Variant	rs73541330
Chromosome Location	chr9:98112107-98112108
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98110078..98112220-chr9:98115357..98117832,2	K562	blood:
2	chr9:98112082..98114768-chr9:98116884..98119446,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1800360	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1886993	0.83[AMR][1000 genomes]
rs2121200	0.83[AMR][1000 genomes]
rs35108112	0.83[AMR][1000 genomes]
rs4647386	0.83[AMR][1000 genomes]
rs4647455	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647473	0.83[AMR][1000 genomes]
rs4647505	0.83[AMR][1000 genomes]
rs57471585	0.83[AMR][1000 genomes]
rs7034939	1.00[AMR][1000 genomes]
rs7037729	0.83[AMR][1000 genomes]
rs73528466	1.00[AMR][1000 genomes]
rs73528478	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73530498	0.83[AMR][1000 genomes]
rs73532103	0.83[AMR][1000 genomes]
rs73532167	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532195	0.83[AMR][1000 genomes]
rs73532199	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534887	0.83[AMR][1000 genomes]
rs73534888	0.83[AMR][1000 genomes]
rs73534898	0.83[AMR][1000 genomes]
rs73537212	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73538039	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73539203	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7854840	0.83[AMR][1000 genomes]
rs9792481	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv3330996	chr9:98083446-98112507	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98111000-98112400	Bivalent Enhancer	Fetal Brain Male	brain
2	chr9:98111000-98112800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr9:98111200-98112200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:98111200-98112200	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr9:98111200-98112400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
6	chr9:98111200-98112400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:98111200-98112600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
8	chr9:98111200-98112600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
9	chr9:98111200-98112600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr9:98111200-98112600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
11	chr9:98111200-98112600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
12	chr9:98111200-98112800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
13	chr9:98111400-98112200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
14	chr9:98111400-98112200	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:98111400-98112200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr9:98111400-98112200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
17	chr9:98111400-98112200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr9:98111400-98112200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr9:98111400-98112200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr9:98111400-98112200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
21	chr9:98111400-98112200	Flanking Bivalent TSS/Enh	Esophagus	oesophagus
22	chr9:98111400-98112200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
23	chr9:98111400-98112200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
24	chr9:98111400-98112200	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
25	chr9:98111400-98112200	Bivalent/Poised TSS	Thymus	Thymus
26	chr9:98111400-98112200	Active TSS	HepG2	liver
27	chr9:98111400-98112200	Flanking Bivalent TSS/Enh	HMEC	breast
28	chr9:98111400-98112200	Bivalent/Poised TSS	NHEK	skin
29	chr9:98111400-98112400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr9:98111400-98112400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr9:98111400-98112400	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
32	chr9:98111400-98112400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
33	chr9:98111400-98112400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr9:98111400-98112400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr9:98111400-98112400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr9:98111400-98112400	Enhancers	Liver	Liver
37	chr9:98111400-98112400	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
38	chr9:98111400-98112400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
39	chr9:98111400-98112400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
40	chr9:98111400-98112400	Flanking Active TSS	Ovary	ovary
41	chr9:98111400-98112400	Flanking Bivalent TSS/Enh	Placenta Amnion	Placenta Amnion
42	chr9:98111400-98112400	ZNF genes & repeats	Spleen	Spleen
43	chr9:98111400-98112600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr9:98111400-98112600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr9:98111400-98112600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
46	chr9:98111400-98112600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr9:98111400-98112800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
48	chr9:98111600-98112200	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr9:98111600-98112200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr9:98111600-98112200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood

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