Variant report

Variant	rs73532195
Chromosome Location	chr9:97951902-97951903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97906541..97908120-chr9:97951638..97953781,2	MCF-7	breast:
2	chr9:97950616..97952464-chr9:98272435..98274822,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1800360	0.83[AMR][1000 genomes]
rs1886993	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2121200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35108112	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647386	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647455	0.83[AMR][1000 genomes]
rs4647473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647505	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57471585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7034939	0.83[AMR][1000 genomes]
rs7037729	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73528466	0.83[AMR][1000 genomes]
rs73528478	0.83[AMR][1000 genomes]
rs73530498	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532103	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532167	0.83[AMR][1000 genomes]
rs73532199	0.83[AMR][1000 genomes]
rs73534887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534898	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73537212	0.83[AMR][1000 genomes]
rs73538039	0.83[AMR][1000 genomes]
rs73539203	0.83[AMR][1000 genomes]
rs73541330	0.83[AMR][1000 genomes]
rs7854840	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9792481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97920000-97952000	Weak transcription	Aorta	Aorta
2	chr9:97920000-97952000	Weak transcription	Esophagus	oesophagus
3	chr9:97930600-97952000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:97930800-97952400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:97941000-97952200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:97941000-97959800	Weak transcription	Pancreas	Pancrea
7	chr9:97945600-97952400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr9:97945800-97952800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:97946000-97952000	Weak transcription	Fetal Intestine Large	intestine
10	chr9:97946000-97952200	Weak transcription	Fetal Heart	heart
11	chr9:97946200-97952000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:97946200-97955600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr9:97946200-97955800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:97946400-97952000	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr9:97948400-97952400	Weak transcription	HMEC	breast
16	chr9:97948800-97955600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr9:97948800-97955600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr9:97949000-97952000	Weak transcription	Small Intestine	intestine
19	chr9:97950200-97952400	Enhancers	K562	blood
20	chr9:97950400-97952200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:97950400-97952400	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr9:97950400-97952400	Enhancers	Brain Substantia Nigra	brain
23	chr9:97950400-97952600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr9:97950400-97952600	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr9:97950400-97952600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr9:97950400-97953000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr9:97950600-97952200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:97950600-97952200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr9:97950600-97952400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr9:97950600-97952400	Flanking Active TSS	HUVEC	blood vessel
31	chr9:97950600-97952600	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr9:97950600-97952600	Enhancers	Fetal Intestine Small	intestine
33	chr9:97950600-97952800	Enhancers	Primary T cells from cord blood	blood
34	chr9:97950600-97953400	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr9:97950800-97952000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr9:97950800-97952000	Weak transcription	Brain Angular Gyrus	brain
37	chr9:97950800-97952000	Weak transcription	Left Ventricle	heart
38	chr9:97950800-97952000	Weak transcription	Lung	lung
39	chr9:97950800-97952000	Weak transcription	Spleen	Spleen
40	chr9:97950800-97952400	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr9:97950800-97952400	Enhancers	Muscle Satellite Cultured Cells	--
42	chr9:97950800-97952600	Enhancers	Fetal Muscle Leg	muscle
43	chr9:97950800-97952800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr9:97950800-97959600	Weak transcription	Gastric	stomach
45	chr9:97951000-97952000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr9:97951000-97952000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr9:97951000-97952000	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr9:97951000-97952400	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr9:97951000-97952400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr9:97951000-97952600	Flanking Active TSS	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links