Variant report

Variant	rs73532167
Chromosome Location	chr9:97930266-97930267
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97928874..97931668-chr9:97931897..97933841,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1800360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1886993	0.83[AMR][1000 genomes]
rs2121200	0.83[AMR][1000 genomes]
rs35108112	0.83[AMR][1000 genomes]
rs4647386	0.83[AMR][1000 genomes]
rs4647455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647473	0.83[AMR][1000 genomes]
rs4647505	0.83[AMR][1000 genomes]
rs57471585	0.83[AMR][1000 genomes]
rs60306328	0.85[AFR][1000 genomes]
rs7034939	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7037729	0.83[AMR][1000 genomes]
rs73528466	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73528478	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73530498	0.83[AMR][1000 genomes]
rs73532103	0.83[AMR][1000 genomes]
rs73532195	0.83[AMR][1000 genomes]
rs73532199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534887	0.83[AMR][1000 genomes]
rs73534888	0.83[AMR][1000 genomes]
rs73534898	0.83[AMR][1000 genomes]
rs73537212	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73538039	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73539203	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541330	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7854840	0.83[AMR][1000 genomes]
rs9792481	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97893800-97940400	Weak transcription	Pancreas	Pancrea
2	chr9:97900800-97930800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:97906400-97933000	Weak transcription	Fetal Kidney	kidney
4	chr9:97906600-97950200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:97910800-97933000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:97920000-97952000	Weak transcription	Aorta	Aorta
7	chr9:97920000-97952000	Weak transcription	Esophagus	oesophagus
8	chr9:97920400-97930400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:97920400-97951800	Weak transcription	HepG2	liver
10	chr9:97920600-97930400	Weak transcription	Liver	Liver
11	chr9:97920600-97931000	Weak transcription	Fetal Lung	lung
12	chr9:97920600-97933000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr9:97920600-97933400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:97920800-97931400	Weak transcription	Hela-S3	cervix
15	chr9:97920800-97931400	Weak transcription	K562	blood
16	chr9:97920800-97932800	Weak transcription	GM12878-XiMat	blood
17	chr9:97921200-97930400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr9:97925800-97938000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:97925800-97944800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr9:97926000-97937800	Weak transcription	Psoas Muscle	Psoas
21	chr9:97926200-97930400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:97926400-97934400	Weak transcription	Primary B cells from cord blood	blood
23	chr9:97926800-97933200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr9:97927600-97950400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr9:97928600-97933200	Weak transcription	NHEK	skin
26	chr9:97929000-97930400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr9:97929200-97931200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:97929400-97930400	ZNF genes & repeats	Fetal Intestine Large	intestine
29	chr9:97929600-97931400	Weak transcription	Dnd41	blood
30	chr9:97929600-97932800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr9:97929800-97930600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
32	chr9:97929800-97930800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr9:97930000-97930600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr9:97930000-97930600	ZNF genes & repeats	Fetal Muscle Leg	muscle
35	chr9:97930000-97930600	ZNF genes & repeats	A549	lung
36	chr9:97930000-97945200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr9:97930000-97945400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr9:97930200-97930400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr9:97930200-97930600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr9:97930200-97930600	ZNF genes & repeats	Fetal Stomach	stomach
41	chr9:97930200-97930600	ZNF genes & repeats	Thymus	Thymus
42	chr9:97930200-97930800	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr9:97930200-97930800	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr9:97930200-97930800	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr9:97930200-97931200	ZNF genes & repeats	Fetal Intestine Small	intestine
46	chr9:97930200-97931800	Strong transcription	Fetal Muscle Trunk	muscle
47	chr9:97930200-97932200	Strong transcription	Primary T cells from cord blood	blood

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