Variant report

Variant	rs7034939
Chromosome Location	chr9:97923166-97923167
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1800360	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1886993	0.83[AMR][1000 genomes]
rs2121200	0.83[AMR][1000 genomes]
rs35108112	0.83[AMR][1000 genomes]
rs4647386	0.83[AMR][1000 genomes]
rs4647455	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647473	0.83[AMR][1000 genomes]
rs4647505	0.83[AMR][1000 genomes]
rs57471585	0.83[AMR][1000 genomes]
rs7037729	0.83[AMR][1000 genomes]
rs73528466	1.00[AMR][1000 genomes]
rs73528478	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73530498	0.83[AMR][1000 genomes]
rs73532103	0.83[AMR][1000 genomes]
rs73532167	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532195	0.83[AMR][1000 genomes]
rs73532199	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534887	0.83[AMR][1000 genomes]
rs73534888	0.83[AMR][1000 genomes]
rs73534898	0.83[AMR][1000 genomes]
rs73537212	1.00[AMR][1000 genomes]
rs73538039	1.00[AMR][1000 genomes]
rs73539203	1.00[AMR][1000 genomes]
rs73541330	1.00[AMR][1000 genomes]
rs7854840	0.83[AMR][1000 genomes]
rs9792481	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038523	chr9:97797032-97923774	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
2	nsv540175	chr9:97797032-97923774	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
3	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97890000-97928000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:97893800-97940400	Weak transcription	Pancreas	Pancrea
3	chr9:97894200-97925600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:97900800-97930800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:97901600-97925000	Weak transcription	Fetal Intestine Large	intestine
6	chr9:97902000-97929800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:97905800-97924000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:97906400-97933000	Weak transcription	Fetal Kidney	kidney
9	chr9:97906600-97950200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr9:97910800-97933000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:97911200-97930000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr9:97913200-97929000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:97913200-97930200	Weak transcription	Primary T cells from cord blood	blood
14	chr9:97913400-97929800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr9:97914200-97923400	Weak transcription	Fetal Intestine Small	intestine
16	chr9:97917400-97925200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr9:97920000-97925600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr9:97920000-97952000	Weak transcription	Aorta	Aorta
19	chr9:97920000-97952000	Weak transcription	Esophagus	oesophagus
20	chr9:97920400-97925600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr9:97920400-97930400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr9:97920400-97951800	Weak transcription	HepG2	liver
23	chr9:97920600-97923400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:97920600-97925200	Weak transcription	Adipose Nuclei	Adipose
25	chr9:97920600-97925200	Weak transcription	Psoas Muscle	Psoas
26	chr9:97920600-97925800	Weak transcription	Fetal Stomach	stomach
27	chr9:97920600-97930400	Weak transcription	Liver	Liver
28	chr9:97920600-97931000	Weak transcription	Fetal Lung	lung
29	chr9:97920600-97933000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr9:97920600-97933400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr9:97920800-97931400	Weak transcription	Hela-S3	cervix
32	chr9:97920800-97931400	Weak transcription	K562	blood
33	chr9:97920800-97932800	Weak transcription	GM12878-XiMat	blood
34	chr9:97921200-97930400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr9:97921400-97923400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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