Variant report

Variant	rs73539203
Chromosome Location	chr9:98025896-98025897
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:98024543..98026089-chr9:98030746..98033601,2	K562	blood:
2	chr9:98015101..98016805-chr9:98024708..98026804,2	MCF-7	breast:
3	chr9:98025141..98027582-chr9:98078429..98080414,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158169	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1800360	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1886993	0.83[AMR][1000 genomes]
rs2121200	0.83[AMR][1000 genomes]
rs35108112	0.83[AMR][1000 genomes]
rs4647386	0.83[AMR][1000 genomes]
rs4647455	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647473	0.83[AMR][1000 genomes]
rs4647505	0.83[AMR][1000 genomes]
rs57471585	0.83[AMR][1000 genomes]
rs7034939	1.00[AMR][1000 genomes]
rs7037729	0.83[AMR][1000 genomes]
rs73528466	1.00[AMR][1000 genomes]
rs73528478	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73530498	0.83[AMR][1000 genomes]
rs73532103	0.83[AMR][1000 genomes]
rs73532167	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532195	0.83[AMR][1000 genomes]
rs73532199	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534887	0.83[AMR][1000 genomes]
rs73534888	0.83[AMR][1000 genomes]
rs73534898	0.83[AMR][1000 genomes]
rs73537212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73538039	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541330	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7854840	0.83[AMR][1000 genomes]
rs9792481	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98009000-98026600	Weak transcription	A549	lung
2	chr9:98009200-98027600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:98013200-98027400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:98013400-98027600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:98015600-98027600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:98017600-98030800	Weak transcription	Fetal Stomach	stomach
7	chr9:98024200-98027600	Weak transcription	Pancreas	Pancrea
8	chr9:98024200-98034600	Weak transcription	Esophagus	oesophagus
9	chr9:98024400-98027400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:98024400-98027400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr9:98024400-98027400	Weak transcription	NHLF	lung
12	chr9:98024400-98027600	Weak transcription	Gastric	stomach
13	chr9:98024400-98027600	Weak transcription	Small Intestine	intestine
14	chr9:98024600-98026400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:98024600-98027000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:98024600-98027000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:98024600-98027200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:98024600-98027400	Weak transcription	NH-A	brain
19	chr9:98024800-98026800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:98024800-98027200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr9:98024800-98027600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr9:98024800-98029400	Weak transcription	Right Ventricle	heart
23	chr9:98025000-98026200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr9:98025000-98026400	Weak transcription	Stomach Mucosa	stomach
25	chr9:98025000-98027000	Weak transcription	K562	blood
26	chr9:98025000-98027400	Weak transcription	Fetal Intestine Large	intestine
27	chr9:98025200-98026800	Weak transcription	Fetal Intestine Small	intestine
28	chr9:98025600-98030200	Weak transcription	HepG2	liver

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