Variant report

Variant	rs9792533
Chromosome Location	chr9:97949014-97949015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97927437..97930043-chr9:97948954..97951128,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs12683030	0.85[JPT][hapmap]
rs12683182	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[ASN][1000 genomes]
rs12684215	1.00[ASN][1000 genomes]
rs12685903	1.00[ASN][1000 genomes]
rs12686588	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[ASN][1000 genomes]
rs1875835	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1886993	1.00[ASN][1000 genomes]
rs2121200	1.00[ASN][1000 genomes]
rs2404458	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs35108112	1.00[ASN][1000 genomes]
rs3780566	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3802449	0.85[JPT][hapmap]
rs400727	0.85[JPT][hapmap]
rs4647348	0.89[ASN][1000 genomes]
rs4647352	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4647354	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.89[ASN][1000 genomes]
rs4647360	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647367	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647378	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647386	1.00[ASN][1000 genomes]
rs4647387	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4647397	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647398	1.00[ASN][1000 genomes]
rs4647402	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647405	1.00[ASN][1000 genomes]
rs4647408	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[ASN][1000 genomes]
rs4647414	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[ASN][1000 genomes]
rs4647436	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647437	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647449	1.00[ASN][1000 genomes]
rs4647465	1.00[ASN][1000 genomes]
rs4647466	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647472	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647473	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647477	1.00[ASN][1000 genomes]
rs4647484	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[ASN][1000 genomes]
rs4647485	1.00[ASN][1000 genomes]
rs4647486	1.00[ASN][1000 genomes]
rs4647491	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647493	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[ASN][1000 genomes]
rs4647508	1.00[ASN][1000 genomes]
rs4647509	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647510	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647514	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[ASN][1000 genomes]
rs4647516	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647521	0.88[ASN][1000 genomes]
rs4647549	0.88[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MKK][hapmap]
rs60228132	1.00[ASN][1000 genomes]
rs7037729	1.00[ASN][1000 genomes]
rs73530498	1.00[ASN][1000 genomes]
rs73532103	1.00[ASN][1000 genomes]
rs73534887	1.00[ASN][1000 genomes]
rs73534888	1.00[ASN][1000 genomes]
rs73534896	0.89[ASN][1000 genomes]
rs73534898	1.00[ASN][1000 genomes]
rs7854840	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9792415	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[ASN][1000 genomes]
rs9792481	1.00[ASN][1000 genomes]
rs9792691	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97906600-97950200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr9:97920000-97952000	Weak transcription	Aorta	Aorta
3	chr9:97920000-97952000	Weak transcription	Esophagus	oesophagus
4	chr9:97920400-97951800	Weak transcription	HepG2	liver
5	chr9:97927600-97950400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr9:97930600-97950400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr9:97930600-97950800	Weak transcription	Thymus	Thymus
8	chr9:97930600-97952000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:97930800-97951600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr9:97930800-97952400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:97933200-97950600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr9:97939600-97950200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr9:97940200-97950200	Weak transcription	Fetal Lung	lung
14	chr9:97940600-97950600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr9:97940800-97950400	Weak transcription	Fetal Muscle Leg	muscle
16	chr9:97941000-97952200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr9:97941000-97959800	Weak transcription	Pancreas	Pancrea
18	chr9:97941800-97950400	Weak transcription	Gastric	stomach
19	chr9:97944400-97950600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:97945600-97952400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr9:97945800-97950200	Weak transcription	Ovary	ovary
22	chr9:97945800-97950400	Weak transcription	Fetal Kidney	kidney
23	chr9:97945800-97950400	Weak transcription	Right Ventricle	heart
24	chr9:97945800-97950600	Weak transcription	Primary T cells from cord blood	blood
25	chr9:97945800-97950600	Weak transcription	Fetal Intestine Small	intestine
26	chr9:97945800-97951600	Weak transcription	GM12878-XiMat	blood
27	chr9:97945800-97952800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr9:97946000-97950200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr9:97946000-97950400	Weak transcription	Left Ventricle	heart
30	chr9:97946000-97950600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr9:97946000-97951600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr9:97946000-97952000	Weak transcription	Fetal Intestine Large	intestine
33	chr9:97946000-97952200	Weak transcription	Fetal Heart	heart
34	chr9:97946200-97950400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr9:97946200-97950600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr9:97946200-97950800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr9:97946200-97950800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr9:97946200-97952000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr9:97946200-97955600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr9:97946200-97955800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr9:97946400-97950400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr9:97946400-97952000	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr9:97946800-97950400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr9:97946800-97950600	Weak transcription	Brain Hippocampus Middle	brain
45	chr9:97947400-97950800	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr9:97948400-97952400	Weak transcription	HMEC	breast
47	chr9:97948600-97950200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr9:97948800-97950200	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr9:97948800-97950200	Weak transcription	K562	blood
50	chr9:97948800-97950400	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links