Variant report

Variant	rs4647367
Chromosome Location	chr9:98068781-98068782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:98062934..98065072-chr9:98067930..98070513,2	K562	blood:
2	chr9:98067681..98069650-chr9:98269294..98272244,2	MCF-7	breast:
3	chr9:98067922..98070273-chr9:98076676..98079113,2	MCF-7	breast:
4	chr9:98058741..98060444-chr9:98067413..98069103,2	MCF-7	breast:
5	chr9:98066646..98069496-chr9:98077286..98078854,2	K562	blood:

Variant related genes	Relation type
ENSG00000185920	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs12683182	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12684215	1.00[ASN][1000 genomes]
rs12685903	1.00[ASN][1000 genomes]
rs12686588	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1875835	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1886993	1.00[ASN][1000 genomes]
rs2121200	1.00[ASN][1000 genomes]
rs2404458	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs35108112	1.00[ASN][1000 genomes]
rs3780566	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs400727	0.86[JPT][hapmap]
rs4647348	0.89[ASN][1000 genomes]
rs4647352	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4647354	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4647360	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647378	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647386	1.00[ASN][1000 genomes]
rs4647387	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4647397	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647398	1.00[ASN][1000 genomes]
rs4647402	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647405	1.00[ASN][1000 genomes]
rs4647408	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647414	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647436	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647437	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647449	1.00[ASN][1000 genomes]
rs4647465	1.00[ASN][1000 genomes]
rs4647466	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647472	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647473	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647477	1.00[ASN][1000 genomes]
rs4647484	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647485	1.00[ASN][1000 genomes]
rs4647486	1.00[ASN][1000 genomes]
rs4647491	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647493	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647508	1.00[ASN][1000 genomes]
rs4647509	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647510	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647514	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647516	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4647521	0.88[ASN][1000 genomes]
rs60228132	1.00[ASN][1000 genomes]
rs7037729	1.00[ASN][1000 genomes]
rs73530498	1.00[ASN][1000 genomes]
rs73532103	1.00[ASN][1000 genomes]
rs73534887	1.00[ASN][1000 genomes]
rs73534888	1.00[ASN][1000 genomes]
rs73534896	0.89[ASN][1000 genomes]
rs73534898	1.00[ASN][1000 genomes]
rs7854840	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9792415	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9792481	1.00[ASN][1000 genomes]
rs9792533	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9792691	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98060400-98075000	Weak transcription	NHEK	skin
2	chr9:98061000-98068800	Weak transcription	Small Intestine	intestine
3	chr9:98063400-98069800	Weak transcription	Fetal Kidney	kidney
4	chr9:98066000-98069000	Enhancers	HUVEC	blood vessel
5	chr9:98066200-98075200	Weak transcription	Left Ventricle	heart
6	chr9:98066800-98074800	Weak transcription	Thymus	Thymus
7	chr9:98067000-98069200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr9:98067000-98075200	Weak transcription	Lung	lung
9	chr9:98067200-98069000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:98067200-98069000	Enhancers	NHLF	lung
11	chr9:98067400-98068800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr9:98067400-98069000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:98067400-98069000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr9:98067400-98069000	Enhancers	Fetal Lung	lung
15	chr9:98067400-98069200	Enhancers	NHDF-Ad	bronchial
16	chr9:98067400-98070400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:98067600-98068800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr9:98067600-98068800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:98067600-98068800	Enhancers	NH-A	brain
20	chr9:98067600-98069000	Enhancers	Hela-S3	cervix
21	chr9:98067600-98070400	Enhancers	Duodenum Mucosa	Duodenum
22	chr9:98067800-98074200	Weak transcription	GM12878-XiMat	blood
23	chr9:98068000-98068800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:98068000-98068800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr9:98068000-98068800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr9:98068000-98069600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr9:98068200-98068800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr9:98068200-98068800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr9:98068200-98068800	Enhancers	Brain Hippocampus Middle	brain
30	chr9:98068200-98068800	Enhancers	Brain Substantia Nigra	brain
31	chr9:98068200-98068800	Enhancers	Colon Smooth Muscle	Colon
32	chr9:98068200-98068800	Flanking Active TSS	A549	lung
33	chr9:98068200-98068800	Enhancers	HepG2	liver
34	chr9:98068200-98068800	Enhancers	Osteobl	bone
35	chr9:98068200-98069000	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr9:98068200-98070400	Enhancers	Liver	Liver
37	chr9:98068200-98070400	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr9:98068200-98070800	Enhancers	Fetal Intestine Small	intestine
39	chr9:98068400-98068800	Flanking Active TSS	HSMM	muscle
40	chr9:98068400-98068800	Flanking Active TSS	HSMMtube	muscle
41	chr9:98068400-98069000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
42	chr9:98068400-98075200	Weak transcription	HMEC	breast
43	chr9:98068600-98068800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr9:98068600-98068800	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr9:98068600-98069000	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr9:98068600-98069000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr9:98068600-98069000	Enhancers	Fetal Stomach	stomach
48	chr9:98068600-98069000	Enhancers	Ovary	ovary
49	chr9:98068600-98069400	Enhancers	H1 Cell Line	embryonic stem cell
50	chr9:98068600-98069400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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