Variant report

Variant	rs73534875
Chromosome Location	chr9:97965270-97965271
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97964191..97965925-chr9:97967957..97969511,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs2404458	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3780566	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647430	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647502	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647509	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647510	0.93[AFR][1000 genomes]
rs4647516	0.93[AFR][1000 genomes]
rs57641389	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60228132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61358915	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73528484	0.93[AFR][1000 genomes]
rs73528487	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534896	0.88[AFR][1000 genomes]
rs73539228	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73539285	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7859625	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
2	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97952600-97969400	Weak transcription	Fetal Intestine Small	intestine
2	chr9:97958800-97968400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:97959000-97968400	Weak transcription	Fetal Intestine Large	intestine
4	chr9:97960200-97966600	Weak transcription	Lung	lung
5	chr9:97960400-97967000	Weak transcription	Aorta	Aorta
6	chr9:97960600-97969200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr9:97961000-97966600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:97961000-97966600	Weak transcription	HSMMtube	muscle
9	chr9:97961000-97968000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:97961000-97968000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr9:97961000-97968400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:97961200-97967800	Weak transcription	HSMM	muscle
13	chr9:97962000-97980600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:97963000-97993400	Weak transcription	Hela-S3	cervix
15	chr9:97964200-97968000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr9:97964200-97968200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr9:97964400-97967000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr9:97964400-97971800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr9:97964600-97968200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr9:97964800-97966800	Weak transcription	Fetal Lung	lung
21	chr9:97964800-97968000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:97964800-97968400	Weak transcription	Fetal Stomach	stomach
23	chr9:97964800-97969000	Weak transcription	Small Intestine	intestine
24	chr9:97965000-97966400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr9:97965000-97968400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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