Variant report

Variant	rs73546766
Chromosome Location	chr19:21673034-21673035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs4462729	0.90[AFR][1000 genomes]
rs56177049	1.00[AMR][1000 genomes]
rs56217825	0.92[AFR][1000 genomes]
rs57197225	0.82[AFR][1000 genomes]
rs58399826	1.00[AMR][1000 genomes]
rs58686910	1.00[AMR][1000 genomes]
rs60559953	1.00[AMR][1000 genomes]
rs61115928	0.90[AFR][1000 genomes]
rs61242234	1.00[AMR][1000 genomes]
rs61563055	1.00[AMR][1000 genomes]
rs61663351	0.92[AFR][1000 genomes]
rs7254417	1.00[AMR][1000 genomes]
rs7259339	0.90[AFR][1000 genomes]
rs73546753	1.00[AMR][1000 genomes]
rs73546769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73546778	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73546782	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73546785	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73546787	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73546789	0.95[AFR][1000 genomes]
rs73550367	1.00[AMR][1000 genomes]
rs73552443	1.00[AMR][1000 genomes]
rs73552446	1.00[AMR][1000 genomes]
rs73552469	1.00[AMR][1000 genomes]
rs73552476	1.00[AMR][1000 genomes]
rs73552482	1.00[AMR][1000 genomes]
rs73926349	0.95[AFR][1000 genomes]
rs73931207	1.00[AMR][1000 genomes]
rs8104582	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv3325271	chr19:21445407-21792817	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	esv2751783	chr19:21465822-21726337	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	esv3363678	chr19:21483148-21756908	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv578952	chr19:21535707-21868584	Genic enhancers Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv833782	chr19:21663537-21845722	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv510759	chr19:21664791-21723191	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21658200-21687800	Weak transcription	Brain Substantia Nigra	brain
2	chr19:21666800-21687600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr19:21669000-21677600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr19:21669000-21687600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr19:21669200-21673400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr19:21669800-21681800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr19:21671000-21676800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr19:21672200-21673800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
9	chr19:21672200-21675200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr19:21672200-21681800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
11	chr19:21672400-21673200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr19:21672600-21673200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr19:21672600-21674200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr19:21672800-21681000	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr19:21673000-21673400	Strong transcription	Primary hematopoietic stem cells	blood
16	chr19:21673000-21680200	Strong transcription	H1 Cell Line	embryonic stem cell

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