Variant report

Variant	rs73551752
Chromosome Location	chr19:39649380-39649381
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:39649335..39651223-chr19:39816830..39818600,2	MCF-7	breast:
2	chr19:39615259..39630637-chr19:39640467..39653924,38	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130669	Chromatin interaction
ENSG00000269172	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11878229	0.97[AFR][1000 genomes]
rs11878648	0.90[AFR][1000 genomes]
rs11879084	0.84[AFR][1000 genomes]
rs11879196	0.84[AFR][1000 genomes]
rs11881029	0.97[AFR][1000 genomes]
rs11882129	0.84[AFR][1000 genomes]
rs11882668	0.97[AFR][1000 genomes]
rs11882711	0.97[AFR][1000 genomes]
rs16973231	0.90[AFR][1000 genomes]
rs57716250	0.97[AFR][1000 genomes]
rs59303188	0.84[AFR][1000 genomes]
rs60229944	0.90[AFR][1000 genomes]
rs7260015	0.90[AFR][1000 genomes]
rs73551720	0.84[AFR][1000 genomes]
rs73551743	0.97[AFR][1000 genomes]
rs73551744	0.97[AFR][1000 genomes]
rs73551749	0.97[AFR][1000 genomes]
rs73930300	0.90[AFR][1000 genomes]
rs73933809	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833829	chr19:39569681-39730777	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv432048	chr19:39572060-39850060	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv3403825	chr19:39646612-39650810	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39617400-39659800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr19:39630800-39651000	Weak transcription	NHDF-Ad	bronchial
3	chr19:39631000-39660000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr19:39636000-39668200	Weak transcription	Primary B cells from cord blood	blood
5	chr19:39636400-39665600	Weak transcription	Aorta	Aorta
6	chr19:39636800-39650800	Weak transcription	HUVEC	blood vessel
7	chr19:39637000-39653600	Weak transcription	Brain Germinal Matrix	brain
8	chr19:39637400-39660800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr19:39638000-39661400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr19:39640000-39672600	Weak transcription	GM12878-XiMat	blood
11	chr19:39640200-39660000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr19:39642000-39649600	Enhancers	Placenta	Placenta
13	chr19:39644200-39652200	Enhancers	Placenta Amnion	Placenta Amnion
14	chr19:39644400-39649600	Enhancers	Pancreas	Pancrea
15	chr19:39644400-39651800	Genic enhancers	Fetal Intestine Small	intestine
16	chr19:39644600-39649400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr19:39644600-39649400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr19:39644600-39649400	Enhancers	Lung	lung
19	chr19:39644600-39649600	Enhancers	K562	blood
20	chr19:39644600-39649800	Enhancers	Fetal Intestine Large	intestine
21	chr19:39644600-39652200	Enhancers	Stomach Mucosa	stomach
22	chr19:39644800-39652400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr19:39645200-39659000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr19:39645400-39649600	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr19:39645400-39654600	Enhancers	Ovary	ovary
26	chr19:39645800-39658000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr19:39646600-39649400	Enhancers	Right Ventricle	heart
28	chr19:39646600-39652200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr19:39646600-39653200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr19:39646600-39659000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr19:39646800-39659200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr19:39646800-39660600	Weak transcription	Dnd41	blood
33	chr19:39647000-39650400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr19:39647200-39649400	Weak transcription	Primary T cells from cord blood	blood
35	chr19:39647200-39660400	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr19:39647400-39649400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr19:39647400-39651800	Genic enhancers	Spleen	Spleen
38	chr19:39647600-39653400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr19:39647600-39653400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr19:39647600-39660600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr19:39647600-39664800	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr19:39647800-39649400	Enhancers	Liver	Liver
43	chr19:39647800-39649600	Genic enhancers	A549	lung
44	chr19:39647800-39650800	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr19:39647800-39651000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr19:39647800-39653400	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr19:39647800-39653600	Weak transcription	Fetal Thymus	thymus
48	chr19:39647800-39670400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr19:39648000-39650400	Weak transcription	NHEK	skin
50	chr19:39648000-39650600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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