The 2.0 version of rSNPBase

Variant report

Variant rs11882668
Chromosome Location chr19:39653818-39653819
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:101 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:39617400-39659800 Weak transcription Primary T regulatory cells fromperipheralblood blood
2 chr19:39631000-39660000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr19:39636000-39668200 Weak transcription Primary B cells from cord blood blood
4 chr19:39636400-39665600 Weak transcription Aorta Aorta
5 chr19:39637400-39660800 Weak transcription Primary hematopoietic stem cells blood
6 chr19:39638000-39661400 Weak transcription H9 Cell Line embryonic stem cell
7 chr19:39640000-39672600 Weak transcription GM12878-XiMat blood
8 chr19:39640200-39660000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
9 chr19:39645200-39659000 Weak transcription Primary T helper naive cells fromperipheralblood blood
10 chr19:39645400-39654600 Enhancers Ovary ovary
11 chr19:39645800-39658000 Weak transcription HUES48 Cell Line embryonic stem cell
12 chr19:39646600-39659000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
13 chr19:39646800-39659200 Weak transcription iPS-15b Cell Line embryonic stem cell
14 chr19:39646800-39660600 Weak transcription Dnd41 blood
15 chr19:39647200-39660400 Weak transcription Primary T helper cells fromperipheralblood blood
16 chr19:39647600-39660600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
17 chr19:39647600-39664800 Weak transcription Primary T helper cells PMA-I stimulated --
18 chr19:39647800-39670400 Weak transcription Primary T killer naive cells fromperipheralblood blood
19 chr19:39649000-39657400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
20 chr19:39649200-39656400 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr19:39649200-39659400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
22 chr19:39649400-39659400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
23 chr19:39649600-39659400 Weak transcription Primary T cells fromperipheralblood blood
24 chr19:39649800-39659800 Weak transcription Primary T cells from cord blood blood
25 chr19:39650000-39657200 Weak transcription Duodenum Mucosa Duodenum
26 chr19:39650000-39657200 Weak transcription Sigmoid Colon Sigmoid Colon
27 chr19:39650600-39657000 Weak transcription Cortex derived primary cultured neurospheres brain
28 chr19:39651000-39655600 Enhancers Pancreas Pancrea
29 chr19:39651200-39657000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
30 chr19:39651200-39659000 Weak transcription Thymus Thymus
31 chr19:39651600-39656400 Weak transcription Rectal Mucosa Donor 29 rectum
32 chr19:39651600-39657000 Weak transcription Fetal Brain Female brain
33 chr19:39651800-39655000 Strong transcription Fetal Intestine Small intestine
34 chr19:39651800-39655400 Weak transcription Liver Liver
35 chr19:39651800-39656400 Weak transcription Fetal Muscle Leg muscle
36 chr19:39651800-39660600 Weak transcription Primary monocytes fromperipheralblood blood
37 chr19:39651800-39660800 Weak transcription Monocytes-CD14+_RO01746 blood
38 chr19:39652000-39656200 Weak transcription Brain Inferior Temporal Lobe brain
39 chr19:39652000-39656200 Weak transcription Colonic Mucosa Colon
40 chr19:39652000-39656400 Weak transcription Brain Hippocampus Middle brain
41 chr19:39652000-39656600 Weak transcription Colon Smooth Muscle Colon
42 chr19:39652000-39657200 Weak transcription Rectal Smooth Muscle rectum
43 chr19:39652000-39657600 Weak transcription NHEK skin
44 chr19:39652000-39658400 Weak transcription Primary hematopoietic stem cells short term culture blood
45 chr19:39652000-39659600 Weak transcription NHLF lung
46 chr19:39652000-39660400 Weak transcription Adipose Nuclei Adipose
47 chr19:39652000-39660600 Weak transcription Skeletal Muscle Female skeletal muscle
48 chr19:39652000-39660800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
49 chr19:39652200-39654000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
50 chr19:39652200-39655000 Weak transcription A549 lung

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Last update: Aug 31, 2015