Variant report
| Variant | rs11880984 |
|---|---|
| Chromosome Location | chr19:39701511-39701512 |
| allele | A/C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr19:39699475..39701716-chr19:39889022..39890849,2 | MCF-7 | breast: | |
| 2 | chr19:39694662..39698816-chr19:39700094..39703085,3 | K562 | blood: | |
| 3 | chr19:39699114..39701619-chr19:39703320..39705265,2 | K562 | blood: | |
| 4 | chr19:39698828..39701571-chr19:39895887..39898728,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000179751 | Chromatin interaction |
| ENSG00000128016 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs11878229 | 1.00[EUR][1000 genomes] |
| rs11878648 | 1.00[EUR][1000 genomes] |
| rs11879084 | 1.00[EUR][1000 genomes] |
| rs11879196 | 1.00[EUR][1000 genomes] |
| rs11879341 | 1.00[EUR][1000 genomes] |
| rs11881029 | 1.00[EUR][1000 genomes] |
| rs11882129 | 1.00[EUR][1000 genomes] |
| rs11882668 | 1.00[EUR][1000 genomes] |
| rs11882711 | 1.00[EUR][1000 genomes] |
| rs11882955 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16973231 | 1.00[EUR][1000 genomes] |
| rs57716250 | 1.00[EUR][1000 genomes] |
| rs57769351 | 1.00[EUR][1000 genomes] |
| rs58626126 | 1.00[EUR][1000 genomes] |
| rs58909586 | 1.00[EUR][1000 genomes] |
| rs59303188 | 1.00[EUR][1000 genomes] |
| rs60229944 | 1.00[EUR][1000 genomes] |
| rs61641657 | 1.00[EUR][1000 genomes] |
| rs7246294 | 1.00[EUR][1000 genomes] |
| rs7254424 | 1.00[EUR][1000 genomes] |
| rs7260015 | 1.00[EUR][1000 genomes] |
| rs73551720 | 1.00[EUR][1000 genomes] |
| rs73551743 | 1.00[EUR][1000 genomes] |
| rs73551744 | 1.00[EUR][1000 genomes] |
| rs73551749 | 1.00[EUR][1000 genomes] |
| rs73551786 | 1.00[EUR][1000 genomes] |
| rs73553708 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73553711 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73553738 | 1.00[EUR][1000 genomes] |
| rs73553740 | 1.00[EUR][1000 genomes] |
| rs73553742 | 1.00[EUR][1000 genomes] |
| rs73930732 | 1.00[EUR][1000 genomes] |
| rs73933809 | 1.00[EUR][1000 genomes] |
| rs73933837 | 1.00[EUR][1000 genomes] |
| rs8101586 | 1.00[EUR][1000 genomes] |
| rs8111473 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833829 | chr19:39569681-39730777 | Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
| 2 | nsv432048 | chr19:39572060-39850060 | Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 42 gene(s) | inside rSNPs | diseases |
| 3 | esv1796470 | chr19:39679379-39714631 | Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv518540 | chr19:39697974-39731783 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr19:39695800-39702200 | Weak transcription | A549 | lung |
| 2 | chr19:39699200-39705600 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
