Variant report

Variant	rs61641657
Chromosome Location	chr19:39694577-39694578
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000266559	Chromatin interaction
ENSG00000128016	Chromatin interaction
ENSG00000130669	Chromatin interaction
ENSG00000188505	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11878229	1.00[EUR][1000 genomes]
rs11878648	1.00[EUR][1000 genomes]
rs11879084	1.00[EUR][1000 genomes]
rs11879196	1.00[EUR][1000 genomes]
rs11879341	1.00[EUR][1000 genomes]
rs11880984	1.00[EUR][1000 genomes]
rs11881029	1.00[EUR][1000 genomes]
rs11882129	1.00[EUR][1000 genomes]
rs11882668	1.00[EUR][1000 genomes]
rs11882711	1.00[EUR][1000 genomes]
rs11882955	1.00[EUR][1000 genomes]
rs16973231	1.00[EUR][1000 genomes]
rs57716250	1.00[EUR][1000 genomes]
rs57769351	1.00[EUR][1000 genomes]
rs58626126	1.00[EUR][1000 genomes]
rs58909586	1.00[EUR][1000 genomes]
rs59303188	1.00[EUR][1000 genomes]
rs60229944	1.00[EUR][1000 genomes]
rs7246294	1.00[EUR][1000 genomes]
rs7254424	1.00[EUR][1000 genomes]
rs7260015	1.00[EUR][1000 genomes]
rs73551720	1.00[EUR][1000 genomes]
rs73551743	1.00[EUR][1000 genomes]
rs73551744	1.00[EUR][1000 genomes]
rs73551749	1.00[EUR][1000 genomes]
rs73551786	1.00[EUR][1000 genomes]
rs73553708	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73553711	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73553738	1.00[EUR][1000 genomes]
rs73553740	1.00[EUR][1000 genomes]
rs73553742	1.00[EUR][1000 genomes]
rs73930732	1.00[EUR][1000 genomes]
rs73933809	1.00[EUR][1000 genomes]
rs73933837	1.00[EUR][1000 genomes]
rs8101586	1.00[EUR][1000 genomes]
rs8111473	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833829	chr19:39569681-39730777	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv432048	chr19:39572060-39850060	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv1796470	chr19:39679379-39714631	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39692600-39695600	Active TSS	Pancreas	Pancrea
2	chr19:39692800-39694600	Weak transcription	K562	blood
3	chr19:39692800-39695400	Weak transcription	A549	lung
4	chr19:39693600-39699200	Weak transcription	Gastric	stomach
5	chr19:39693800-39695600	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr19:39694200-39694600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr19:39694200-39695200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
8	chr19:39694400-39694600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr19:39694400-39694600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr19:39694400-39694600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr19:39694400-39694800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr19:39694400-39694800	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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