Variant report

Variant	rs73551766
Chromosome Location	chr6:132511311-132511312
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132506466-132514341	GM12878	blood:
2	6:132176847-132180372..6:132506466-132514341	GM12878	blood:
3	6:132182612-132191683..6:132506466-132514341	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000118523	Chromatin interaction
ENSG00000197594	Chromatin interaction
ENSG00000227220	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs59647867	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60774416	1.00[EUR][1000 genomes]
rs73549533	1.00[EUR][1000 genomes]
rs73549567	1.00[EUR][1000 genomes]
rs73549592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551714	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551722	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551740	1.00[EUR][1000 genomes]
rs73551794	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551802	1.00[EUR][1000 genomes]
rs73553716	1.00[EUR][1000 genomes]
rs73553722	1.00[EUR][1000 genomes]
rs73779168	1.00[EUR][1000 genomes]
rs7741927	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7750378	1.00[EUR][1000 genomes]
rs7771183	1.00[EUR][1000 genomes]
rs7771622	1.00[EUR][1000 genomes]
rs9483373	1.00[EUR][1000 genomes]
rs9483375	1.00[EUR][1000 genomes]
rs9493168	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132508400-132513400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:132508600-132511800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:132509000-132512400	Enhancers	HUVEC	blood vessel
4	chr6:132509600-132514200	Enhancers	Osteobl	bone
5	chr6:132509600-132514600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:132509800-132511600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:132509800-132512800	Enhancers	NH-A	brain
8	chr6:132509800-132513000	Enhancers	NHDF-Ad	bronchial
9	chr6:132510000-132512200	Enhancers	HMEC	breast
10	chr6:132510000-132512800	Enhancers	HSMM	muscle
11	chr6:132510000-132513000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:132510200-132511400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:132510200-132513400	Enhancers	NHLF	lung
14	chr6:132510400-132511400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:132510400-132511400	Weak transcription	HSMMtube	muscle
16	chr6:132510400-132512800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:132510600-132511600	Weak transcription	Aorta	Aorta
18	chr6:132510600-132512600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:132510600-132512600	Weak transcription	Small Intestine	intestine
20	chr6:132510800-132511400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:132511200-132511800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:132511200-132512000	Enhancers	Adipose Nuclei	Adipose
23	chr6:132511200-132512000	Enhancers	Rectal Smooth Muscle	rectum
24	chr6:132511200-132512400	Enhancers	Skeletal Muscle Male	skeletal muscle

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