Variant report
| Variant | rs9483375 |
|---|---|
| Chromosome Location | chr6:132355150-132355151 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 6:132269655-132282174..6:132349036-132358071 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000118523 | Chromatin interaction |
| ENSG00000227220 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs56029910 | 1.00[AMR][1000 genomes] |
| rs59647867 | 1.00[EUR][1000 genomes] |
| rs60774416 | 1.00[EUR][1000 genomes] |
| rs73549533 | 1.00[EUR][1000 genomes] |
| rs73549567 | 1.00[EUR][1000 genomes] |
| rs73549592 | 1.00[EUR][1000 genomes] |
| rs73551714 | 1.00[EUR][1000 genomes] |
| rs73551722 | 1.00[EUR][1000 genomes] |
| rs73551732 | 1.00[EUR][1000 genomes] |
| rs73551740 | 1.00[EUR][1000 genomes] |
| rs73551766 | 1.00[EUR][1000 genomes] |
| rs73551794 | 1.00[EUR][1000 genomes] |
| rs73551802 | 1.00[EUR][1000 genomes] |
| rs73553716 | 1.00[EUR][1000 genomes] |
| rs73553722 | 1.00[EUR][1000 genomes] |
| rs73779168 | 1.00[EUR][1000 genomes] |
| rs7741927 | 1.00[EUR][1000 genomes] |
| rs7750378 | 1.00[EUR][1000 genomes] |
| rs7771183 | 1.00[EUR][1000 genomes] |
| rs7771622 | 1.00[EUR][1000 genomes] |
| rs9321317 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9483373 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9493168 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv886673 | chr6:132299748-132363507 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv427768 | chr6:132300468-132398477 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
