Variant report

Variant	rs73554176
Chromosome Location	chr19:44517575-44517576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:44510538..44512317-chr19:44516235..44517741,2	K562	blood:
2	chr19:44508681..44513697-chr19:44514534..44518037,6	K562	blood:
3	chr19:44516780..44518514-chr19:44607954..44609959,2	K562	blood:
4	chr19:44507222..44510776-chr19:44517439..44520079,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000159882	Chromatin interaction
ENSG00000267680	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11083731	1.00[EUR][1000 genomes]
rs11880006	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11880958	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55784929	1.00[EUR][1000 genomes]
rs56376181	1.00[EUR][1000 genomes]
rs56985355	1.00[EUR][1000 genomes]
rs59735455	1.00[EUR][1000 genomes]
rs60620675	1.00[EUR][1000 genomes]
rs61182068	1.00[EUR][1000 genomes]
rs7260493	1.00[EUR][1000 genomes]
rs73554150	1.00[EUR][1000 genomes]
rs73554151	1.00[EUR][1000 genomes]
rs73554153	1.00[EUR][1000 genomes]
rs73554156	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73554158	1.00[EUR][1000 genomes]
rs73554172	1.00[EUR][1000 genomes]
rs73554181	1.00[EUR][1000 genomes]
rs73554183	1.00[EUR][1000 genomes]
rs73554199	1.00[EUR][1000 genomes]
rs73556203	1.00[EUR][1000 genomes]
rs73558261	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469650	chr19:44405994-44555426	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44509200-44520600	ZNF genes & repeats	Liver	Liver
2	chr19:44509400-44518200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:44510200-44517600	ZNF genes & repeats	Primary B cells from cord blood	blood
4	chr19:44510400-44517600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
5	chr19:44510400-44517600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
6	chr19:44510600-44517600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
7	chr19:44515000-44517600	Weak transcription	HepG2	liver
8	chr19:44515400-44518600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr19:44515400-44529000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr19:44515800-44518400	Weak transcription	Fetal Stomach	stomach
11	chr19:44516000-44517600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr19:44516200-44517800	Weak transcription	Fetal Thymus	thymus
13	chr19:44516400-44518000	Weak transcription	Placenta	Placenta
14	chr19:44516400-44518200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr19:44516400-44518400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr19:44516400-44518800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr19:44516400-44519200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr19:44516400-44519800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr19:44516600-44518000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr19:44516800-44518000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr19:44516800-44518200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr19:44516800-44519000	Weak transcription	Fetal Brain Male	brain
23	chr19:44516800-44519600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr19:44516800-44519600	Weak transcription	Fetal Kidney	kidney
25	chr19:44517000-44528600	Weak transcription	Dnd41	blood
26	chr19:44517200-44518000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr19:44517200-44518600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr19:44517200-44520000	Weak transcription	Left Ventricle	heart
29	chr19:44517200-44520200	Weak transcription	HSMM	muscle
30	chr19:44517200-44521600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr19:44517400-44520800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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