Variant report
| Variant | rs73554181 |
|---|---|
| Chromosome Location | chr19:44524026-44524027 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11083731 | 1.00[EUR][1000 genomes] |
| rs11880006 | 1.00[EUR][1000 genomes] |
| rs11880958 | 1.00[EUR][1000 genomes] |
| rs55784929 | 1.00[EUR][1000 genomes] |
| rs56376181 | 1.00[EUR][1000 genomes] |
| rs56985355 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59735455 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60620675 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60992756 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61182068 | 1.00[EUR][1000 genomes] |
| rs7260493 | 1.00[EUR][1000 genomes] |
| rs73554150 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73554151 | 1.00[EUR][1000 genomes] |
| rs73554153 | 1.00[EUR][1000 genomes] |
| rs73554156 | 1.00[EUR][1000 genomes] |
| rs73554158 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73554172 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73554176 | 1.00[EUR][1000 genomes] |
| rs73554183 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73554199 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73556203 | 1.00[EUR][1000 genomes] |
| rs73556206 | 0.94[AFR][1000 genomes] |
| rs73558261 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv469650 | chr19:44405994-44555426 | Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 2 | nsv833840 | chr19:44520620-44715760 | Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr19:44515400-44529000 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 2 | chr19:44517000-44528600 | Weak transcription | Dnd41 | blood |
