Variant report

Variant	rs73556203
Chromosome Location	chr19:44531702-44531703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44529555..44531861-chr19:44550598..44553119,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11083731	1.00[EUR][1000 genomes]
rs11880006	1.00[EUR][1000 genomes]
rs11880958	1.00[EUR][1000 genomes]
rs55784929	1.00[EUR][1000 genomes]
rs56376181	1.00[EUR][1000 genomes]
rs56985355	1.00[EUR][1000 genomes]
rs59735455	1.00[EUR][1000 genomes]
rs60620675	1.00[EUR][1000 genomes]
rs61182068	1.00[EUR][1000 genomes]
rs7260493	1.00[EUR][1000 genomes]
rs73554150	1.00[EUR][1000 genomes]
rs73554151	1.00[EUR][1000 genomes]
rs73554153	1.00[EUR][1000 genomes]
rs73554156	1.00[EUR][1000 genomes]
rs73554158	1.00[EUR][1000 genomes]
rs73554172	1.00[EUR][1000 genomes]
rs73554176	1.00[EUR][1000 genomes]
rs73554181	1.00[EUR][1000 genomes]
rs73554183	1.00[EUR][1000 genomes]
rs73554199	1.00[EUR][1000 genomes]
rs73558261	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469650	chr19:44405994-44555426	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv833840	chr19:44520620-44715760	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44530200-44535400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:44530400-44531800	Weak transcription	Psoas Muscle	Psoas
3	chr19:44530400-44532200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr19:44530400-44536200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr19:44530600-44531800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr19:44530600-44531800	Weak transcription	GM12878-XiMat	blood
7	chr19:44530600-44531800	Weak transcription	NHEK	skin
8	chr19:44530600-44532000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr19:44530600-44532000	Strong transcription	Fetal Intestine Large	intestine
10	chr19:44530600-44532000	Weak transcription	Pancreas	Pancrea
11	chr19:44530600-44532000	Weak transcription	NH-A	brain
12	chr19:44530600-44532200	Weak transcription	NHDF-Ad	bronchial
13	chr19:44530600-44534400	Weak transcription	Stomach Mucosa	stomach
14	chr19:44530600-44534600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr19:44530600-44534800	Weak transcription	HUVEC	blood vessel
16	chr19:44530600-44535000	Weak transcription	HMEC	breast
17	chr19:44530800-44532200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
18	chr19:44530800-44532200	Strong transcription	Fetal Muscle Leg	muscle
19	chr19:44530800-44533000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
20	chr19:44530800-44534200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr19:44530800-44534600	Strong transcription	Brain Inferior Temporal Lobe	brain
22	chr19:44530800-44534600	Strong transcription	Fetal Muscle Trunk	muscle
23	chr19:44530800-44537000	ZNF genes & repeats	Fetal Kidney	kidney
24	chr19:44530800-44537000	ZNF genes & repeats	Fetal Lung	lung
25	chr19:44530800-44537200	ZNF genes & repeats	Ovary	ovary
26	chr19:44530800-44539200	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
27	chr19:44530800-44539600	ZNF genes & repeats	Fetal Brain Female	brain
28	chr19:44530800-44542600	ZNF genes & repeats	Liver	Liver
29	chr19:44531000-44531800	Strong transcription	Primary T cells from cord blood	blood
30	chr19:44531000-44531800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr19:44531000-44531800	Strong transcription	Left Ventricle	heart
32	chr19:44531000-44532000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr19:44531000-44532200	Strong transcription	Brain Cingulate Gyrus	brain
34	chr19:44531000-44532400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr19:44531000-44532400	ZNF genes & repeats	Rectal Smooth Muscle	rectum
36	chr19:44531000-44532600	Strong transcription	Brain Anterior Caudate	brain
37	chr19:44531000-44532600	ZNF genes & repeats	Lung	lung
38	chr19:44531000-44532800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr19:44531000-44533200	Strong transcription	Fetal Stomach	stomach
40	chr19:44531000-44533400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr19:44531000-44533400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr19:44531000-44533600	ZNF genes & repeats	Spleen	Spleen
43	chr19:44531000-44533800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr19:44531000-44534000	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr19:44531000-44534000	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr19:44531000-44534200	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr19:44531000-44534600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr19:44531000-44534600	Strong transcription	Fetal Brain Male	brain
49	chr19:44531000-44534600	Strong transcription	HSMM	muscle
50	chr19:44531000-44534800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links