Variant report

Variant	rs73555021
Chromosome Location	chr9:117870773-117870774
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117870174..117872468-chr9:117872679..117875329,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000041982	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10982540	0.80[AFR][1000 genomes]
rs57869818	1.00[AMR][1000 genomes]
rs7028078	1.00[AMR][1000 genomes]
rs7035499	1.00[AMR][1000 genomes]
rs73551051	1.00[AMR][1000 genomes]
rs73553184	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73553201	1.00[AMR][1000 genomes]
rs73555006	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73555009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73555011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73556825	1.00[AMR][1000 genomes]
rs73556836	1.00[AMR][1000 genomes]
rs73556838	1.00[AMR][1000 genomes]
rs73556860	1.00[AMR][1000 genomes]
rs73558939	1.00[AMR][1000 genomes]
rs73558998	1.00[AMR][1000 genomes]
rs73561148	1.00[AMR][1000 genomes]
rs73561155	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831696	chr9:117701582-117874150	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893768	chr9:117853103-117903975	Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv831697	chr9:117860416-118023927	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117849400-117876200	Weak transcription	Aorta	Aorta
2	chr9:117849400-117877600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:117853400-117874000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:117861600-117876000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:117861800-117874800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:117862400-117872000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:117862600-117877200	Weak transcription	Fetal Kidney	kidney
8	chr9:117862600-117877200	Weak transcription	Fetal Stomach	stomach
9	chr9:117865800-117870800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:117866400-117875000	Enhancers	Rectal Smooth Muscle	rectum
11	chr9:117866600-117870800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:117867400-117870800	Enhancers	Liver	Liver
13	chr9:117867400-117872200	Enhancers	NHEK	skin
14	chr9:117867400-117874000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:117868800-117871600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr9:117869000-117876800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr9:117869000-117876800	Weak transcription	HSMM	muscle
18	chr9:117869200-117870800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:117869200-117871000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:117869200-117872200	Enhancers	NHDF-Ad	bronchial
21	chr9:117869200-117878400	Weak transcription	Fetal Lung	lung
22	chr9:117869800-117872800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr9:117870000-117872400	Genic enhancers	Colon Smooth Muscle	Colon
24	chr9:117870200-117871600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr9:117870200-117876000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr9:117870200-117876600	Genic enhancers	Cortex derived primary cultured neurospheres	brain
27	chr9:117870400-117870800	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr9:117870400-117871200	Strong transcription	NHLF	lung
29	chr9:117870400-117871400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr9:117870400-117872000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:117870400-117872200	Genic enhancers	Osteobl	bone
32	chr9:117870400-117876600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr9:117870400-117876600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr9:117870400-117879000	Weak transcription	Esophagus	oesophagus
35	chr9:117870600-117871000	Weak transcription	HMEC	breast
36	chr9:117870600-117871400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr9:117870600-117871600	Strong transcription	NH-A	brain
38	chr9:117870600-117873000	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr9:117870600-117874000	Weak transcription	Stomach Smooth Muscle	stomach

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