Variant report

Variant	rs73556836
Chromosome Location	chr9:117904838-117904839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs57869818	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7028078	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7035499	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551051	1.00[AMR][1000 genomes]
rs73553184	1.00[AMR][1000 genomes]
rs73553201	1.00[AMR][1000 genomes]
rs73555006	1.00[AMR][1000 genomes]
rs73555009	1.00[AMR][1000 genomes]
rs73555011	1.00[AMR][1000 genomes]
rs73555021	1.00[AMR][1000 genomes]
rs73556825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73556838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73556860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73558939	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73558998	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73561148	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73561155	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831697	chr9:117860416-118023927	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv6681	chr9:117893926-117938609	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117890200-117909000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:117897800-117905000	Weak transcription	Osteobl	bone
3	chr9:117898400-117905000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:117900000-117908400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:117904000-117907400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr9:117904200-117905000	Enhancers	Brain Anterior Caudate	brain
7	chr9:117904200-117907000	Enhancers	Brain Hippocampus Middle	brain
8	chr9:117904200-117909200	Weak transcription	Aorta	Aorta
9	chr9:117904400-117905400	Enhancers	Brain Substantia Nigra	brain
10	chr9:117904400-117906000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:117904600-117905000	Flanking Active TSS	Dnd41	blood
12	chr9:117904600-117905400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr9:117904600-117905600	Enhancers	Brain Cingulate Gyrus	brain
14	chr9:117904800-117905400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:117904800-117905600	Enhancers	Rectal Smooth Muscle	rectum
16	chr9:117904800-117907600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:117904800-117910000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:117904800-117910200	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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